| Literature DB >> 29691444 |
Richard Hansen1,2,3, Sophie Gibson4, Eduardo De Paiva Alves5, Mark Goddard4, Andrew MacLaren6, Anne Marie Karcher7, Susan Berry4, Elaina S R Collie-Duguid5, Emad El-Omar8, Mike Munro6, Georgina L Hold9,10.
Abstract
Hyperbilirubinemia is so common in newborns as to be termed physiological. The most common bacteria involved in early-onset neonatal sepsis are Streptococcus agalactiae, commonly called Group B Streptococcus (GBS). Whilst previous studies show bilirubin has antioxidant properties and is beneficial in endotoxic shock, little thought has been given to whether bilirubin might have antibacterial properties. In this study, we performed a transcriptomic and proteomic assessment of GBS cultured in the presence/absence of bilirubin. Our analysis revealed that increasing levels of bilirubin (>100 µmol/L) negatively correlated with GBS growth (18% reduction from 0-400 µmol/L on plate model, p < 0.001; 33% reduction from 0-100 µmol/L in liquid model, p = 0.02). Transcriptome analysis demonstrated 19 differentially expressed genes, almost exclusively up-regulated in the presence of bilirubin. Proteomic analysis identified 12 differentially expressed proteins, half over-expressed in the presence of bilirubin. Functional analysis using Gene Ontology and KEGG pathways18 revealed a differential expression of genes involved in transport and carbohydrate metabolism, suggesting bilirubin may impact on substrate utilisation. The data improve our understanding of the mechanisms modulating GBS survival in neonatal hyperbilirubinemia and suggest physiological jaundice may have an evolutionary role in protection against early-onset neonatal sepsis.Entities:
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Year: 2018 PMID: 29691444 PMCID: PMC5915570 DOI: 10.1038/s41598-018-24811-3
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1Effect of bilirubin on growth of GBS. (A) Solid media model. Total number of colonies were determined following overnight incubation of blood agar plates containing bilirubin at concentrations ranging from 0–400 µmol/l bilirubin dissolved in DMSO/1 M NaOH. Results are presented as percentage change in growth from 100% on DMSO/1 M NaOH control. N = 7 isolates with experiments repeated in triplicate. Values are presented as mean+/− SEM. All values depicted with an asterisk were statically significant (independent sample T-test). * = 0.011, ** = 0.024 and *** = <0.001. (B) Liquid culture model. Total number of colonies were determined following incubation for up to 24 hrs of Blood/serum containing bilirubin at a concentration of 100 µmol/l bilirubin dissolved in DMSO/1 M NaOH or Blood/serum containing vehicle (DMSO/1 M NaOH). Results are presented as colony forming units (CFU). N = 3 isolates with experiments repeated in triplicate. Values are presented as mean + /− SEM. All values depicted with an asterisk were statically significant (independent sample T-test). * = 0.02.
S. agalactiae genes differentially expressed in response to bilirubin.
| ID | Name | log fold change | p-value | FDR |
|---|---|---|---|---|
| SAG1901 | Glucuronyl hydrolase | 1.13 | 1.29E-07 | 1.29E-04 |
| SAG1807 | Hypothetical protein | 1.30 | 1.35E-07 | 1.29E-04 |
| SAG1898 | PTS system transporter subunit IID | 1.87 | 1.06E-06 | 5.81E-04 |
| SAG0547 | Hypothetical protein | −1.32 | 1.22E-06 | 5.81E-04 |
| SAG0118 | Ribokinase | 1.12 | 2.96E-05 | 1.13E-02 |
| SAG1902 | PTS system transporter subunit IIA | 1.34 | 4.07E-05 | 1.29E-02 |
| SAG1899 | PTS system transporter subunit IIC | 1.83 | 5.82E-05 | 1.59E-02 |
| SAG0169 | Formate acetyltransferase | 1.32 | 1.26E-04 | 2.46E-02 |
| SAG1350 | Surface antigen-like protein | 2.02 | 1.28E-04 | 2.46E-02 |
| SAG0680 | Hypothetical protein | 0.41 | 1.29E-04 | 2.46E-02 |
| SAG0325 | Pyruvate formate-lyase-activating enzyme | 1.81 | 1.91E-04 | 3.31E-02 |
| SAG1900 | PTS system transporter subunit IIB | 1.55 | 2.67E-04 | 4.02E-02 |
| SAG0795 | Hypothetical protein | 2.83 | 2.73E-04 | 4.02E-02 |
| SAG1925 | Sugar ABC transporter ATP-binding protein | 2.02 | 3.37E-04 | 4.60E-02 |
| SAG1441 | Maltose/maltodextrin ABC transporter maltose/maltodextrin-binding protein | 2.19 | 4.69E-04 | 5.91E-02 |
| SAG1690 | PTS system transporter subunit IIABC | 2.01 | 5.22E-04 | 5.91E-02 |
| SAG2072 | Uridine phosphorylase | 1.70 | 5.26E-04 | 5.91E-02 |
| SAG0331 | Formate acetyltransferase | 1.65 | 8.21E-04 | 8.43E-02 |
| SAG2014 | Hypothetical protein | 1.17 | 8.39E-04 | 8.43E-02 |
Figure 2Representative 2D Gel electrophoresis image from single isolate (65Q) incubated in three types of media, in triplicate. Samples were incubated for 24 hours at 37 °C in blood serum (media), solvent control (DMSO/1 M NaOH) (solvent) or 100 µmol/l bilirubin dissolved in DMSO/1 M NaOH. Total protein from each sample was assessed for quality by 1DGE prior to resolution by 2DGE and staining by Coomassie Brilliant Blue. These images were used for comparison of protein profiles with and without exposure to bilirubin by Progenesis SameSpots.
Figure 3Average normalised spot volumes of GBS 19 Y, 63 L and 65 Q, isolates each in triplicate ± standard deviation. ANOVA analysis identified 22 significant spots, 14 were up-regulated in the presence of bilirubin, and 8 were down-regulated.
S. agalactiae proteins altered in response to bilirubin.
| Spot # | Fold-change | p-value |
|---|---|---|
| Significantly higher expression in the presence of bilirubin | ||
| 1788 | 1.545 | 0.002 |
| 3282 | 1.709 | 0.012 |
| 3941 | 1.403 | 0.015 |
| 2160 | 1.704 | 0.02 |
| 4397 | 1.369 | 0.021 |
| 1832 | 2.67 | 0.027 |
| 2309 | 1.493 | 0.032 |
| 3647 | 1.51 | 0.034 |
| 3629 | 1.944 | 0.037 |
| 1858 | 2.769 | 0.038 |
| 4461 | 1.62 | 0.046 |
| 2373 | 1.207 | 0.048 |
|
| ||
| 2484 | 1.223 | 0.018 |
| 3514 | 1.444 | 0.023 |
| 2724 | 1.239 | 0.024 |
| 2627 | 1.341 | 0.024 |
| 3028 | 1.217 | 0.032 |
| 2194 | 1.792 | 0.039 |
| 2614 | 1.316 | 0.043 |
| 2579 | 1.428 | 0.047 |
LC-MS identified proteins altered in response to bilirubin.
| Spot # | Protein identity (RefSeq protein ID, RefSeq gene ID) | MUDPIT score | Sequence coverage (%) | Fold-change | p-value |
|---|---|---|---|---|---|
|
| |||||
| 1788 | ABC transporter permease (WP_000897811, no RefSeq gene ID) | 37 | 5 | 1.545 | 0.002 |
| 3282 | Phosphoglycerate kinase (AAL85687, upp) | 79 | 5 | 1.709 | 0.012 |
| 3941 | S-ribosylhomocysteinase (WP_000159883, luxS) | 186 | 39 | 1.403 | 0.015 |
| 2160 | Molecular chaperone GroEL (WP_002435951, groEL) | 105 | 9 | 1.704 | 0.021 |
| 4397 | GntR family transcriptional regulator (WP_000312253, DX05_05330) | 48 | 29 | 1.369 | 0.025 |
|
| |||||
| 2484 | N-acetyl neuramic acid synthetase NeuB (WP_000262516, neuB) | 326 | 55 | 1.223 | 0.018 |
| 3514 | Single-stranded DNA-binding protein (WP_000609585, ssb1) | 194 | 73 | 1.444 | 0.023 |
| 2724 | dTDP-4-dehydrorhamnose reductase (WP_000600895, rfbD) | 244 | 46 | 1.239 | 0.024 |
| 2627 | Ornithine carbamoyltransferase (WP_000793622, arcB1) | 193 | 42 | 1.341 | 0.024 |
| 3028 | Iron ABC transporter ATP-binding protein (WP_000114500, no RefSeq gene ID) | 151 | 35 | 1.217 | 0.032 |
10 significant proteins from across three GBS isolates were selected and identified by LC-MS and MUDPIT database.
GO enrichment analysis depicting enriched biological processes and molecular functions which are altered in response to bilirubin exposure.
| GO Category | Enrichment p-value |
|---|---|
|
| |
| PTS system | 2.42E-04 |
| Carbohydrate phosphorylation | 4.97E-02 |
| UMP salvage | 4.97E-02 |
| Nucleotide catabolic process | 4.97E-02 |
| Arginine catabolic process to ornithine | 4.97E-02 |
| Carbohydrate transmembrane transport | 5.13E-02 |
| Guanosine tetraphosphate metabolic process | 6.57E-02 |
|
| |
| Catalytic activity | 1.40E-03 |
| Protein-N(PI)-phosphohistidine-sugar phosphotransferase activity | 4.30E-02 |
| Carboxyl- or carbamoyltransferase activity | 4.97E-02 |
| Transferase activity, transferring pentosyl groups | 6.57E-02 |
| Single-stranded DNA binding | 9.70E-02 |
GO categories enriched for the set of 19 genes differentially expressed and 12 genes corresponding to proteins differentially expressed.
Figure 4KEGG pathways analysis (A) Phosphotransferase system, (B) Galactose Metabolism, (C) Selected ABC transporters (KEGG is described in the following paper: Kanehisa, M. & Goto, S. KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 28, 27–30 (2000).