Literature DB >> 29684007

Identifying robust hysteresis in networks.

Tomáš Gedeon1, Bree Cummins1, Shaun Harker2, Konstantin Mischaikow2.   

Abstract

We present a new modeling and computational tool that computes rigorous summaries of network dynamics over large sets of parameter values. These summaries, organized in a database, can be searched for observed dynamics, e.g., bistability and hysteresis, to discover parameter regimes over which they are supported. We illustrate our approach on several networks underlying the restriction point of the cell cycle in humans and yeast. We rank networks by how robustly they support hysteresis, which is the observed phenotype. We find that the best 6-node human network and the yeast network share similar topology and robustness of hysteresis, in spite of having no homology between the corresponding nodes of the network. Our approach provides a new tool linking network structure and dynamics.

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Year:  2018        PMID: 29684007      PMCID: PMC5933818          DOI: 10.1371/journal.pcbi.1006121

Source DB:  PubMed          Journal:  PLoS Comput Biol        ISSN: 1553-734X            Impact factor:   4.475


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