Literature DB >> 29683660

Fishing for Drug Targets: A Focus on Diazirine Photoaffinity Probe Synthesis.

James R Hill1, Avril A B Robertson1,2.   

Abstract

Target identification is a high-priority, albeit challenging, aspect of drug discovery. Diazirine-based photoaffinity probes (PAPs) can facilitate the process by covalently capturing transient molecular interactions. This can help identify target proteins and map the ligand's interactome. Diazirine probes have even been incorporated by cellular machinery into proteins. Embarking on the synthesis of customized PAPs, containing either an aliphatic or trifluoromethyl phenyl diazirine, can be a considerable endeavor, particularly for medicinal chemists and chemical biologists new to the field. This review takes a synthetic focus, aiming to summarize available routes, propose new avenues, and illuminate recent advances in diazirine synthesis. Select examples of diazirine photoaffinity labeling applications have been included throughout to provide instructive definition of the advantages and limitations of the technology while simultaneously highlighting how these reagents can be applied in a practical sense.

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Year:  2018        PMID: 29683660     DOI: 10.1021/acs.jmedchem.7b01561

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  21 in total

1.  Small Molecule Interactome Mapping by Photo-Affinity Labeling (SIM-PAL) to Identify Binding Sites of Small Molecules on a Proteome-Wide Scale.

Authors:  Hope A Flaxman; David K Miyamoto; Christina M Woo
Journal:  Curr Protoc Chem Biol       Date:  2019-12

2.  Application of 15N2-Diazirines as a Versatile Platform for Hyperpolarization of Biological Molecules by d-DNP.

Authors:  Hyejin Park; Guannan Zhang; Junu Bae; Thomas Theis; Warren S Warren; Qiu Wang
Journal:  Bioconjug Chem       Date:  2020-02-14       Impact factor: 4.774

3.  Small molecule photocatalysis enables drug target identification via energy transfer.

Authors:  Aaron D Trowbridge; Ciaran P Seath; Frances P Rodriguez-Rivera; Beryl X Li; Barbara E Dul; Adam G Schwaid; Benito F Buksh; Jacob B Geri; James V Oakley; Olugbeminiyi O Fadeyi; Rob C Oslund; Keun Ah Ryu; Cory White; Tamara Reyes-Robles; Paul Tawa; Dann L Parker; David W C MacMillan
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-15       Impact factor: 12.779

4.  Developing Photoaffinity Probes for Dopamine Receptor D2 to Determine Targets of Parkinson's Disease Drugs.

Authors:  Spencer T Kim; Emma J Doukmak; Raymond G Flax; Dylan J Gray; Victoria N Zirimu; Ebbing de Jong; Rachel C Steinhardt
Journal:  ACS Chem Neurosci       Date:  2022-10-02       Impact factor: 5.780

Review 5.  Covalent cannabinoid receptor ligands - structural insight and selectivity challenges.

Authors:  Ian Liddle; Michelle Glass; Joel D A Tyndall; Andrea J Vernall
Journal:  RSC Med Chem       Date:  2022-04-04

Review 6.  State-of-the-art accounts of hyperpolarized 15N-labeled molecular imaging probes for magnetic resonance spectroscopy and imaging.

Authors:  Hyejin Park; Qiu Wang
Journal:  Chem Sci       Date:  2022-05-17       Impact factor: 9.969

Review 7.  γ-Secretase inhibitors and modulators: Mechanistic insights into the function and regulation of γ-Secretase.

Authors:  Pengju Nie; Abhishek Vartak; Yue-Ming Li
Journal:  Semin Cell Dev Biol       Date:  2020-04-02       Impact factor: 7.727

Review 8.  Put a ring on it: application of small aliphatic rings in medicinal chemistry.

Authors:  Matthias R Bauer; Paolo Di Fruscia; Simon C C Lucas; Iacovos N Michaelides; Jennifer E Nelson; R Ian Storer; Benjamin C Whitehurst
Journal:  RSC Med Chem       Date:  2021-01-07

Review 9.  Lessons in Organic Fluorescent Probe Discovery.

Authors:  Sachin B Wagh; Vladimir A Maslivetc; James J La Clair; Alexander Kornienko
Journal:  Chembiochem       Date:  2021-06-23       Impact factor: 3.164

10.  How Physiologic Targets Can Be Distinguished from Drug-Binding Proteins.

Authors:  Kojo Mensa-Wilmot
Journal:  Mol Pharmacol       Date:  2021-05-03       Impact factor: 4.054

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