Literature DB >> 29678859

GSyellow, a Multifaceted Tag for Functional Protein Analysis in Monocot and Dicot Plants.

Nienke Besbrugge1,2, Jelle Van Leene1,2, Dominique Eeckhout1,2, Bernard Cannoot1,2, Shubhada R Kulkarni1,2,3, Nancy De Winne1,2, Geert Persiau1,2, Eveline Van De Slijke1,2, Michiel Bontinck1,2, Stijn Aesaert1, Francis Impens4,5,6, Kris Gevaert4,5, Daniel Van Damme1,2, Mieke Van Lijsebettens1,2, Dirk Inzé1,2, Klaas Vandepoele1,2,3, Hilde Nelissen1,2, Geert De Jaeger7,2.   

Abstract

The ability to tag proteins has boosted the emergence of generic molecular methods for protein functional analysis. Fluorescent protein tags are used to visualize protein localization, and affinity tags enable the mapping of molecular interactions by, for example, tandem affinity purification or chromatin immunoprecipitation. To apply these widely used molecular techniques on a single transgenic plant line, we developed a multifunctional tandem affinity purification tag, named GSyellow, which combines the streptavidin-binding peptide tag with citrine yellow fluorescent protein. We demonstrated the versatility of the GSyellow tag in the dicot Arabidopsis (Arabidopsis thaliana) using a set of benchmark proteins. For proof of concept in monocots, we assessed the localization and dynamic interaction profile of the leaf growth regulator ANGUSTIFOLIA3 (AN3), fused to the GSyellow tag, along the growth zone of the maize (Zea mays) leaf. To further explore the function of ZmAN3, we mapped its DNA-binding landscape in the growth zone of the maize leaf through chromatin immunoprecipitation sequencing. Comparison with AN3 target genes mapped in the developing maize tassel or in Arabidopsis cell cultures revealed strong conservation of AN3 target genes between different maize tissues and across monocots and dicots, respectively. In conclusion, the GSyellow tag offers a powerful molecular tool for distinct types of protein functional analyses in dicots and monocots. As this approach involves transforming a single construct, it is likely to accelerate both basic and translational plant research.
© 2018 American Society of Plant Biologists. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2018        PMID: 29678859      PMCID: PMC6001315          DOI: 10.1104/pp.18.00175

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  62 in total

1.  A Repressor Protein Complex Regulates Leaf Growth in Arabidopsis.

Authors:  Nathalie Gonzalez; Laurens Pauwels; Alexandra Baekelandt; Liesbeth De Milde; Jelle Van Leene; Nienke Besbrugge; Ken S Heyndrickx; Amparo Cuéllar Pérez; Astrid Nagels Durand; Rebecca De Clercq; Eveline Van De Slijke; Robin Vanden Bossche; Dominique Eeckhout; Kris Gevaert; Klaas Vandepoele; Geert De Jaeger; Alain Goossens; Dirk Inzé
Journal:  Plant Cell       Date:  2015-07-31       Impact factor: 11.277

2.  A multicolored set of in vivo organelle markers for co-localization studies in Arabidopsis and other plants.

Authors:  Brook K Nelson; Xue Cai; Andreas Nebenführ
Journal:  Plant J       Date:  2007-07-30       Impact factor: 6.417

3.  An improved toolbox to unravel the plant cellular machinery by tandem affinity purification of Arabidopsis protein complexes.

Authors:  Jelle Van Leene; Dominique Eeckhout; Bernard Cannoot; Nancy De Winne; Geert Persiau; Eveline Van De Slijke; Leen Vercruysse; Maarten Dedecker; Aurine Verkest; Klaas Vandepoele; Lennart Martens; Erwin Witters; Kris Gevaert; Geert De Jaeger
Journal:  Nat Protoc       Date:  2014-12-18       Impact factor: 13.491

4.  In Vivo Identification of Plant Protein Complexes Using IP-MS/MS.

Authors:  Jos R Wendrich; Sjef Boeren; Barbara K Möller; Dolf Weijers; Bert De Rybel
Journal:  Methods Mol Biol       Date:  2017

5.  Dynamic Changes in ANGUSTIFOLIA3 Complex Composition Reveal a Growth Regulatory Mechanism in the Maize Leaf.

Authors:  Hilde Nelissen; Dominique Eeckhout; Kirin Demuynck; Geert Persiau; Alan Walton; Michiel van Bel; Marieke Vervoort; Jasper Candaele; Jolien De Block; Stijn Aesaert; Mieke Van Lijsebettens; Sofie Goormachtig; Klaas Vandepoele; Jelle Van Leene; Michael Muszynski; Kris Gevaert; Dirk Inzé; Geert De Jaeger
Journal:  Plant Cell       Date:  2015-06-02       Impact factor: 11.277

6.  Somatic cytokinesis and pollen maturation in Arabidopsis depend on TPLATE, which has domains similar to coat proteins.

Authors:  Daniël Van Damme; Silvie Coutuer; Riet De Rycke; Francois-Yves Bouget; Dirk Inzé; Danny Geelen
Journal:  Plant Cell       Date:  2006-12-22       Impact factor: 11.277

7.  Reducing the environmental sensitivity of yellow fluorescent protein. Mechanism and applications.

Authors:  O Griesbeck; G S Baird; R E Campbell; D A Zacharias; R Y Tsien
Journal:  J Biol Chem       Date:  2001-05-31       Impact factor: 5.157

8.  A transcriptional coactivator, AtGIF1, is involved in regulating leaf growth and morphology in Arabidopsis.

Authors:  Jeong Hoe Kim; Hans Kende
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-23       Impact factor: 11.205

9.  GRASSIUS: a platform for comparative regulatory genomics across the grasses.

Authors:  Alper Yilmaz; Milton Y Nishiyama; Bernardo Garcia Fuentes; Glaucia Mendes Souza; Daniel Janies; John Gray; Erich Grotewold
Journal:  Plant Physiol       Date:  2008-11-05       Impact factor: 8.340

10.  Isolation of protein complexes from the model legume Medicago truncatula by tandem affinity purification in hairy root cultures.

Authors:  Jonas Goossens; Nathan De Geyter; Alan Walton; Dominique Eeckhout; Jan Mertens; Jacob Pollier; Jennifer Fiallos-Jurado; Annick De Keyser; Rebecca De Clercq; Jelle Van Leene; Kris Gevaert; Geert De Jaeger; Sofie Goormachtig; Alain Goossens
Journal:  Plant J       Date:  2016-09-27       Impact factor: 6.417

View more
  8 in total

1.  TPX2-LIKE PROTEIN3 Is the Primary Activator of α-Aurora Kinases and Is Essential for Embryogenesis.

Authors:  Joanna Boruc; Xingguang Deng; Evelien Mylle; Nienke Besbrugge; Matthias Van Durme; Dmitri Demidov; Eva Dvořák Tomaštíková; Tong-Reen Connie Tan; Michaël Vandorpe; Dominique Eeckhout; Tom Beeckman; Moritz K Nowack; Geert De Jaeger; Honghui Lin; Bo Liu; Daniël Van Damme
Journal:  Plant Physiol       Date:  2019-05-16       Impact factor: 8.340

2.  SAMBA controls cell division rate during maize development.

Authors:  Pan Gong; Michiel Bontinck; Kirin Demuynck; Jolien De Block; Kris Gevaert; Dominique Eeckhout; Geert Persiau; Stijn Aesaert; Griet Coussens; Mieke Van Lijsebettens; Laurens Pauwels; Geert De Jaeger; Dirk Inzé; Hilde Nelissen
Journal:  Plant Physiol       Date:  2022-01-20       Impact factor: 8.340

3.  Using Tandem Affinity Purification to Identify Circadian Clock Protein Complexes from Arabidopsis.

Authors:  Maria L Sorkin; Dmitri A Nusinow
Journal:  Methods Mol Biol       Date:  2022

4.  The membrane-localized protein kinase MAP4K4/TOT3 regulates thermomorphogenesis.

Authors:  Xiangyu Xu; Tingting Zhu; Kris Gevaert; Ive De Smet; Lam Dai Vu; Lixia Pan; Martijn van Zanten; Dorrit de Jong; Yaowei Wang; Tim Vanremoortele; Anna M Locke; Brigitte van de Cotte; Nancy De Winne; Elisabeth Stes; Eugenia Russinova; Geert De Jaeger; Daniël Van Damme; Cristobal Uauy
Journal:  Nat Commun       Date:  2021-05-14       Impact factor: 14.919

Review 5.  From Affinity to Proximity Techniques to Investigate Protein Complexes in Plants.

Authors:  Sandra M Kerbler; Roberto Natale; Alisdair R Fernie; Youjun Zhang
Journal:  Int J Mol Sci       Date:  2021-07-01       Impact factor: 5.923

6.  PIF7 controls leaf cell proliferation through an AN3 substitution repression mechanism.

Authors:  Ejaz Hussain; Andrés Romanowski; Karen J Halliday
Journal:  Proc Natl Acad Sci U S A       Date:  2022-02-01       Impact factor: 12.779

7.  PEAPOD repressors modulate and coordinate developmental responses to light intensity in Arabidopsis.

Authors:  Derek W R White
Journal:  New Phytol       Date:  2022-05-25       Impact factor: 10.323

Review 8.  Recent Trends in Plant Protein Complex Analysis in a Developmental Context.

Authors:  Michiel Bontinck; Jelle Van Leene; Astrid Gadeyne; Bert De Rybel; Dominique Eeckhout; Hilde Nelissen; Geert De Jaeger
Journal:  Front Plant Sci       Date:  2018-05-15       Impact factor: 5.753

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.