Literature DB >> 29675737

Use of Genetic Testing for Primary Immunodeficiency Patients.

Jennifer R Heimall1, David Hagin2, Joud Hajjar3, Sarah E Henrickson4,5, Hillary S Hernandez-Trujillo6,7, Yuval Tan8, Lisa Kobrynski9, Kenneth Paris10, Troy R Torgerson11, James W Verbsky12, Richard L Wasserman13, Elena W Y Hsieh14, Jack J Blessing15, Janet S Chou16,17, Monica G Lawrence18, Rebecca A Marsh19, Sergio D Rosenzweig20, Jordan S Orange21,22, Roshini S Abraham23.   

Abstract

Genetic testing plays a critical role in diagnosis for many primary immunodeficiency diseases. The goals of this report are to outline some of the challenges that clinical immunologists face routinely in the use of genetic testing for patient care. In addition, we provide a review of the types of genetic testing used in the diagnosis of PID, including their strengths and limitations. We describe the strengths and limitations of different genetic testing approaches for specific clinical contexts that raise concern for specific PID disorders in light of the challenges reported by the clinical immunologist members of the CIS in a recent membership survey. Finally, we delineate the CIS's recommendations for the use of genetic testing in light of these issues.

Entities:  

Keywords:  Immunodeficiency; genetic testing; sanger sequencing; whole exome testing; whole genome testing

Mesh:

Substances:

Year:  2018        PMID: 29675737     DOI: 10.1007/s10875-018-0489-8

Source DB:  PubMed          Journal:  J Clin Immunol        ISSN: 0271-9142            Impact factor:   8.317


  46 in total

1.  Genome-wide association identifies diverse causes of common variable immunodeficiency.

Authors:  Jordan S Orange; Joseph T Glessner; Elena Resnick; Kathleen E Sullivan; Mary Lucas; Berne Ferry; Cecilia E Kim; Cuiping Hou; Fengxiang Wang; Rosetta Chiavacci; Subra Kugathasan; John W Sleasman; Robert Baldassano; Elena E Perez; Helen Chapel; Charlotte Cunningham-Rundles; Hakon Hakonarson
Journal:  J Allergy Clin Immunol       Date:  2011-04-17       Impact factor: 10.793

2.  DCLRE1C (ARTEMIS) mutations causing phenotypes ranging from atypical severe combined immunodeficiency to mere antibody deficiency.

Authors:  Timo Volk; Ulrich Pannicke; Ismail Reisli; Alla Bulashevska; Julia Ritter; Andrea Björkman; Alejandro A Schäffer; Manfred Fliegauf; Esra H Sayar; Ulrich Salzer; Paul Fisch; Dietmar Pfeifer; Michela Di Virgilio; Hongzhi Cao; Fang Yang; Karin Zimmermann; Sevgi Keles; Zafer Caliskaner; S Ükrü Güner; Detlev Schindler; Lennart Hammarström; Marta Rizzi; Michael Hummel; Qiang Pan-Hammarström; Klaus Schwarz; Bodo Grimbacher
Journal:  Hum Mol Genet       Date:  2015-10-16       Impact factor: 6.150

3.  Carrier and prenatal diagnosis of X-linked severe combined immunodeficiency: mutation detection methods and utilization.

Authors:  J M Puck; L Middelton; A E Pepper
Journal:  Hum Genet       Date:  1997-05       Impact factor: 4.132

Review 4.  Consensus statement: chromosomal microarray is a first-tier clinical diagnostic test for individuals with developmental disabilities or congenital anomalies.

Authors:  David T Miller; Margaret P Adam; Swaroop Aradhya; Leslie G Biesecker; Arthur R Brothman; Nigel P Carter; Deanna M Church; John A Crolla; Evan E Eichler; Charles J Epstein; W Andrew Faucett; Lars Feuk; Jan M Friedman; Ada Hamosh; Laird Jackson; Erin B Kaminsky; Klaas Kok; Ian D Krantz; Robert M Kuhn; Charles Lee; James M Ostell; Carla Rosenberg; Stephen W Scherer; Nancy B Spinner; Dimitri J Stavropoulos; James H Tepperberg; Erik C Thorland; Joris R Vermeesch; Darrel J Waggoner; Michael S Watson; Christa Lese Martin; David H Ledbetter
Journal:  Am J Hum Genet       Date:  2010-05-14       Impact factor: 11.025

5.  Recurrence, submicroscopic complexity, and potential clinical relevance of copy gains detected by array CGH that are shown to be unbalanced insertions by FISH.

Authors:  Nicholas J Neill; Blake C Ballif; Allen N Lamb; Sumit Parikh; J Britt Ravnan; Roger A Schultz; Beth S Torchia; Jill A Rosenfeld; Lisa G Shaffer
Journal:  Genome Res       Date:  2011-03-07       Impact factor: 9.043

6.  A novel immunodeficiency disorder characterized by genetic amplification of interleukin 25.

Authors:  M R Green; E Camilleri; M K Gandhi; J Peake; L R Griffiths
Journal:  Genes Immun       Date:  2011-07-21       Impact factor: 2.676

7.  The gene involved in X-linked agammaglobulinaemia is a member of the src family of protein-tyrosine kinases.

Authors:  D Vetrie; I Vorechovský; P Sideras; J Holland; A Davies; F Flinter; L Hammarström; C Kinnon; R Levinsky; M Bobrow
Journal:  Nature       Date:  1993-01-21       Impact factor: 49.962

Review 8.  B-cell reconstitution for SCID: should a conditioning regimen be used in SCID treatment?

Authors:  Elie Haddad; Sandrine Leroy; Rebecca H Buckley
Journal:  J Allergy Clin Immunol       Date:  2013-03-05       Impact factor: 10.793

9.  Comparison of chromosome analysis and chromosomal microarray analysis: what is the value of chromosome analysis in today's genomic array era?

Authors:  Weimin Bi; Caroline Borgan; Amber N Pursley; Patricia Hixson; Chad A Shaw; Carlos A Bacino; Seema R Lalani; Ankita Patel; Pawel Stankiewicz; James R Lupski; Arthur L Beaudet; Sau Wai Cheung
Journal:  Genet Med       Date:  2012-12-13       Impact factor: 8.822

10.  Guidelines for genetic studies in single patients: lessons from primary immunodeficiencies.

Authors:  Jean-Laurent Casanova; Mary Ellen Conley; Stephen J Seligman; Laurent Abel; Luigi D Notarangelo
Journal:  J Exp Med       Date:  2014-10-13       Impact factor: 14.307

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  24 in total

1.  Droplet digital PCR for identifying copy number variations in patients with primary immunodeficiency disorders.

Authors:  See-Tarn Woon; Julia Mayes; Alexander Quach; Hilary Longhurst; Antonio Ferrante; Rohan Ameratunga
Journal:  Clin Exp Immunol       Date:  2022-05-12       Impact factor: 4.330

2.  Understanding neutropenia secondary to intrinsic or iatrogenic immune dysregulation.

Authors:  Kelly Walkovich; James A Connelly
Journal:  Hematology Am Soc Hematol Educ Program       Date:  2021-12-10

3.  Global Expansion of Jeffrey's Insights: Jeffrey Modell Foundation's Genetic Sequencing Program for Primary Immunodeficiency.

Authors:  Jessica Quinn; Vicki Modell; Britt Johnson; Sarah Poll; Swaroop Aradhya; Jordan S Orange; Fred Modell
Journal:  Front Immunol       Date:  2022-06-10       Impact factor: 8.786

4.  Droplet digital PCR for identifying copy number variations in patients with primary immunodeficiency disorders.

Authors:  See-Tarn Woon; Julia Mayes; Alexander Quach; Hilary Longhurst; Antonio Ferrante; Rohan Ameratunga
Journal:  Clin Exp Immunol       Date:  2021-12-21       Impact factor: 5.732

5.  Molecular diagnosis of childhood immune dysregulation, polyendocrinopathy, and enteropathy, and implications for clinical management.

Authors:  Sarah K Baxter; Tom Walsh; Silvia Casadei; Mary M Eckert; Eric J Allenspach; David Hagin; Gesmar Segundo; Ming K Lee; Suleyman Gulsuner; Brian H Shirts; Kathleen E Sullivan; Michael D Keller; Troy R Torgerson; Mary-Claire King
Journal:  J Allergy Clin Immunol       Date:  2021-04-20       Impact factor: 10.793

Review 6.  Autoimmune Cytopenia as an Early and Initial Presenting Manifestation in Activated PI3 Kinase Delta Syndrome: Case Report and Review.

Authors:  Stephen A Schworer; Olivia L Francis; Steven M Johnson; Benjamin D Smith; Stuart H Gold; Andrew B Smitherman; Eveline Y Wu
Journal:  J Pediatr Hematol Oncol       Date:  2021-11-01       Impact factor: 1.289

7.  Targeted NGS Platforms for Genetic Screening and Gene Discovery in Primary Immunodeficiencies.

Authors:  Cristina Cifaldi; Immacolata Brigida; Federica Barzaghi; Matteo Zoccolillo; Valentina Ferradini; Davide Petricone; Maria Pia Cicalese; Dejan Lazarevic; Davide Cittaro; Maryam Omrani; Enrico Attardi; Francesca Conti; Alessia Scarselli; Maria Chiriaco; Silvia Di Cesare; Francesco Licciardi; Montin Davide; Francesca Ferrua; Clementina Canessa; Claudio Pignata; Silvia Giliani; Simona Ferrari; Georgia Fousteri; Graziano Barera; Pietro Merli; Paolo Palma; Simone Cesaro; Marco Gattorno; Antonio Trizzino; Viviana Moschese; Loredana Chini; Anna Villa; Chiara Azzari; Andrea Finocchi; Franco Locatelli; Paolo Rossi; Federica Sangiuolo; Alessandro Aiuti; Caterina Cancrini; Gigliola Di Matteo
Journal:  Front Immunol       Date:  2019-04-11       Impact factor: 7.561

8.  EuroFlow-Based Flowcytometric Diagnostic Screening and Classification of Primary Immunodeficiencies of the Lymphoid System.

Authors:  Jacques J M van Dongen; Mirjam van der Burg; Tomas Kalina; Martin Perez-Andres; Ester Mejstrikova; Marcela Vlkova; Eduardo Lopez-Granados; Marjolein Wentink; Anne-Kathrin Kienzler; Jan Philippé; Ana E Sousa; Menno C van Zelm; Elena Blanco; Alberto Orfao
Journal:  Front Immunol       Date:  2019-06-13       Impact factor: 7.561

9.  Primary Immunodeficiencies in India: Molecular Diagnosis and the Role of Next-Generation Sequencing.

Authors:  Arun Kumar Arunachalam; Madhavi Maddali; Fouzia N Aboobacker; Anu Korula; Biju George; Vikram Mathews; Eunice Sindhuvi Edison
Journal:  J Clin Immunol       Date:  2020-11-23       Impact factor: 8.317

10.  Clinical Utility of Whole Exome Sequencing and Targeted Panels for the Identification of Inborn Errors of Immunity in a Resource-Constrained Setting.

Authors:  Clair Engelbrecht; Michael Urban; Mardelle Schoeman; Brandon Paarwater; Ansia van Coller; Deepthi Raju Abraham; Helena Cornelissen; Richard Glashoff; Monika Esser; Marlo Möller; Craig Kinnear; Brigitte Glanzmann
Journal:  Front Immunol       Date:  2021-05-21       Impact factor: 7.561

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