| Literature DB >> 29674926 |
Hoang Thi Binh1, Nguyen Van Ngoc1, Shuichiro Tagane2, Hironori Toyama2, Keiko Mase2, Chika Mitsuyuki3, Joeri Sergej Strijk4,5, Yoshihisa Suyama3, Tetsukazu Yahara1,2.
Abstract
The taxonomy of Quercus langbianensis and its relatives in Vietnam and Cambodia have been revised based on evidence obtained from field observations, morphological comparison of herbarium specimens and molecular analyses using both classic and next generation DNA markers. Based on Bayesian inference using rbcL, matK and ITS regions and Neighbour-joining tree using genome-wide sequences amplified with multiplexed inter-simple sequence repeat (ISSR) primers (MIG-seq), the authors recognised ten species in the complex in Vietnam and Cambodia, three of which are newly described in this paper: Q. baolamensissp. nov., Q. bidoupensissp. nov. and Q. honbaensissp. nov. These new species are all phenotypically similar to Q. langbianensiss. str. in having lanceolate to oblanceolate leaf shape, upper 4-5/6-serrated leaf margin, acute or acuminate leaf apex and bracts of cupule arranged in 5-9 rings but distinguished both morphologically and phylogenetically. In molecular phylogenetic reconstructions, Q. bidoupensis is not close to any other species. In the Bayesian tree, Q. honbaensis is sister to both Q. blaoensis and Q. camusiae that are found in the same locality but morphologically distinct and those three species are sister to Q. langbianensiss. str., while Quercus baolamensis is not sister to Q. langbianensiss. str. in both the Bayesian tree and MIG-seq tree. In addition, Q. cambodiensis and Q. baniensis previously reduced to Q. langbianensiss. lat. have been recognised as distinct species. Six species were in need of lectotypification and that is undertaken herein.Entities:
Keywords: DNA barcoding; Fagaceae; MIG-seq, Quercus; Vietnam; taxonomy
Year: 2018 PMID: 29674926 PMCID: PMC5904329 DOI: 10.3897/phytokeys.95.21126
Source DB: PubMed Journal: PhytoKeys ISSN: 1314-2003 Impact factor: 1.635
Figure 1.Collection sites in Vietnam and Cambodia in this study, including eight national parks, four nature reserves and two conservation areas.
Altitudinal distribution of spp. found in Mt. Hon Ba.
| Altitude (m) |
|
|---|---|
| 1498 |
|
| 1336 |
|
| 1204 |
|
| 1021 | No |
| 919 | No |
| 617 |
|
| 400 |
|
| 225 |
|
Summary statistics of datasets used for phylogenetic inference comprising rbcL, matK and ITS sequences.
| Regions |
|
|
| Combined data |
|---|---|---|---|---|
| Aligned sequence length | 657 | 834 | 543 | 2034 |
| Variable DNA sites | 9 | 35 | 98 | 142 |
| Parsimony-informative sites | 3 | 9 | 44 | 56 |
Figure 2.Bayesian phylogeny of 29 samples of and one (outgroup) based on rbcL, matK and ITS sequences. Braches are labelled with posterior probabilities.
Figure 3.NJ tree of 31 samples of and one (outgroup) based on presence/absence data of 16,809 MIG-seq loci. Branches are labelled with bootstrap supports (% of 1000 replicates).
Figure 4.Comparison of complex between NJ tree (left, Clade M3 of Fig. 3) and Bayesian tree (right: Clade 2 of Fig. 2).
Figure 6.Binh & Ngoc. A Leafy twig B Abaxial side of mature leaf C Mature fruit D Inside of cupule E Nut. Materials: A–E from Ngoc et al. V3191.
Figure 12.Binh, Tagane & Yahara. A Leafy twig B Infructescence and mature fruits, C, D Side view and base view of the cupule, respectively, E. Inside of cupule, F. Nut. Materials: A–F from Toyama et al. V1378.
Morphological comparison of complex.
| Characters |
|
|
|
|
|
|
|
|
|
|
|---|---|---|---|---|---|---|---|---|---|---|
| Young shoot | Almost glabrous | Golden tomentose | Curly hairy | Golden tomentose | Straight hairy | Golden tomentose | Almost glabrous | |||
| Leaf margin | Undulate, distinctly serrate in upper 1/2 | Not undulate, almost entire or with a few low teeth in upper 1/4 | Not undulate, distinctly serrate in upper 1/3 | Not undulate, distinctly serrate in upper 5/6–3/4(–2/3) | Not undulate, distinctly serrate in upper 1/3 | Not undulate, distinctly serrate in upper 1/2 | Not undulate, distinctly serrate in upper 1/3 | |||
| Length of petioles | 1.3–2 cm | 1–1.6 cm | 1–2.2 cm | 1.2–2(–2.9) cm | 0.8–1 cm | 1–1.4 cm | 0.9–1.8 cm | 1–2 cm | 0.4–1 cm | 1–2 cm |
| Number of secondary veins | 10–13 pairs | 8–13 pairs | 7–11 pairs | (9–)10–14(–16) pairs | 12–14 pairs | 8–13 pairs | 9–12(–14) pairs | (7–)10–13 pairs | 10–12 pairs | |
| Cupule shape | Obconical | Cup-shaped | Obconical | Bowl-shaped | Cup-shaped | |||||
| Cupule coverage | Enclosing 1/3 of the nut | Enclosing <1/2 of the nut | Enclosing 2/3 of the nut | Enclosing 1/3–1/2 of the nut |
| Enclosing 1/2 of the nut | Enclosing 1/3 of the nut | |||
| Cupule bract | 5–6 rings | 6 rings | 7–8 rings | 6–8 rings | 5–6 rings | 6–9 rings | ||||
| Cupule bract margin | Entire | Sparsely dissected in the lower rings | Distinctly toothed in two lower rings | Undulate | Distinctly toothed in all rings | Nearly entire, not undulate | ||||
| Nut shape | Ovoid | Subglobose | Ovoid | Obovoid to ellipsoid | Subglobose | Ovoid | Subglobose | Ovoid-ellipsoid | Obovoid to ellipsoid | |
| Nut scar | Convex | Flat | Convex | Convex | Flat | Convex | ||||
| Nut hairiness | Glabrous | Densely hairy | Sparsely hairy | Densely hairy | Sparsely hairy | Densely hairy | ||||
Figure 5.A.Camus. A Leafy twig B Abaxial side of mature leaf C Infructescence and young fruits D Dried specimen. Materials: A, B from Hoang T.S. & Tagane S. V6922 C, D from Tagane et al. V3089.
Figure 7.Binh & Ngoc. A Leafy twig B Abaxial side of mature leaf C, D Side view and base view of the cupule, respectively E Inside of cupule F Nut. Materials: A–F from Tagane et al. V4328.
Figure 8.A.Camus A. Branch with fruits B Young fruit C Dried specimen Materials: A–C from Toyama et al. V1366.
Figure 9.Hickel & A.Camus. A Leafy twig B Abaxial side of mature leaf C Infructescence and fruits D Nut E Basal scar of the nut. Materials: A–E from Tagane et al. 4302.
Figure 10.Trel. ex Hickel & A.Camus. A Branch with young fruit, B. Infructescence and young fruits C, D Abaxial side of young and mature leaf, E. Dried specimen. Materials: A–D from Tagane et al. V342 E from Toyama et al. V2173.
Figure 11.A.Camus. A Leafy twig B Infructescence, young fruits and abaxial side of mature leaf C Dried specimen. Materials: A, B from Tagane S., Wai J. V4398 C from Ngoc et al. V3208.
Figure 13.Hickel & A.Camus. A Leafy twig B Abaxial side of mature leaf C Infructescence and mature fruits D Apex of the nut E Basal scar of the nut F Inside of cupule. Materials: A, B from Tagane et al. V 4165 C–F from Tagane et al. V4166.
| 1 | Leaves undulate, distinctly serrate in the upper 1/2. Cupules obconical, enclosing 1/3 of the nut, bracts set in 5–6 rings, margin entire. Nut ovoid, scar convex |
|
| – | Leaves not undulate |
|
| 2 | Leaves almost entire or with a few low teeth. Cupule cup-shaped, enclosing <1/2 of nut, bracts set in 6–8 rings, margin undulate at least in the lower rings. Nut subglobose, scar convex or flat |
|
| – | Leaves distinctly serrate in the upper 5/6 to 1/3 of margin |
|
| 3 | Cupule distinctly narrowed at base, bracts set in 6 rings, sparsely dissected in the lower rings. Nut scar convex |
|
| – | Cupule not distinctly narrowed at base, bracts set in 7–8 rings, margin distinctly toothed in two lower rings. Nut scar flat |
|
| 4 | Cupule obconical |
|
| – | Cupule cup-shaped or bowl-shaped |
|
| 5 | Margin distinctly serrate in the upper 1/3; secondary veins 7–11 pairs; petioles 1.2–2(–2.9) cm long; Cupules enclosing 2/3 of the nut. Nut ovoid |
|
| – | Margin distinctly serrate in the upper 5/6–3/4(–2/3); secondary veins (9–)10–14(–16) pairs; petioles 0.8–1 cm long. Cupules enclosing 1/3–1/2 of the nut. Nut obovoid to ellipsoid |
|
| 6 | Cupule bowl-shaped, enclosing about 2/3 of nut, bracts set in 7 rings, bract margin distinctly toothed in all rings. Nut subglobose |
|
| – | Cupule cup-shaped, enclosing 1/3–2/3 of nut, bracts set in 5–9 rings, bract margin nearly entire |
|
| 7 | Cupules enclosing 2/3 of the nut. Nut ovoid. Young shoots covered with straight whitish hairy. Leaves distinctly serrate in the upper 1/3 |
|
| – | Cupules enclosing 1/3–1/2 of the nut. Nut subglobose, ovoid-ellipsoid, obovoid to ellipsoid. Young shoots covered with golden tomenose or almost glabrous. Leaves regularly distinctly serrate in the upper 1/3–1/2 |
|
| 8 | Cupules enclosing 1/2 of the nut, bracts set in 5–6 rings. Leaves regularly distinctly serrate in the upper 1/3. Nut subglobose, scar convex |
|
| – | Cupules enclosing 1/3 of the nut, bracts set in 6–9 rings. Leaves regularly distinctly serrate in the upper 1/2 or upper 1/3. Nut scar flat or convex |
|
| 9 | Leave regularly distinctly serrate in the upper 1/2; petiole 0.4–1 cm long. Nut ovoid–ellipsoid, scar flat, sparsely hairy |
|
| – | Leave regularly distinctly serrate in the upper 1/3; petiole 1–2 cm long. Nut obovoid to ellipsoid, scar convex, densely hairy |
|
Voucher information and GenBank accession numbers for samples used in this study (newly sequenced data).
| Species | Vouchers | Elevation | GenBank accession no. | MIG-seq | ||
|---|---|---|---|---|---|---|
|
|
|
| ||||
|
|
| 1850 m | + | |||
|
|
| 518 m | + | |||
|
|
| 556 m | – | + | ||
|
|
| 249 m | + | |||
|
|
| 340 m | + | |||
|
|
| 707 m | + | |||
|
|
| 789 m | + | |||
|
|
| 1000 m | + | |||
|
|
| 1695 m | – | – | ||
|
|
| 1698 m | + | |||
|
|
| 225 m | + | |||
|
|
| 1067 m | – | + | ||
|
|
| 1535 m | + | |||
|
|
| 1464 m | + | |||
|
|
| 888 m | – | – | – | – |
|
|
| 1014 m | – | – | – | – |
|
|
| 1014 m | – | – | – | – |
|
|
| 1043 m | – | – | – | – |
|
|
| 1000 m | – | – | – | – |
|
|
| 844 m | + | |||
|
|
| 1498 m | – | – | – | – |
|
|
| 1511 m | – | – | ||
|
|
| 1336 m | + | |||
|
|
| 1695 m | – | + | ||
|
|
| 1489 m | – | – | – | – |
|
|
| N/A | + | |||
|
|
| N/A | + | |||
|
|
| 1400 m | + | |||
|
|
| 1580 m | + | |||
|
|
| 367 m | – | – | – | – |
|
|
| 617 m | – | – | ||
|
|
| 400 m | – | – | ||
|
|
| 225 m | – | – | ||
|
|
| 225 m | + | |||
|
|
| 833 m | + | |||
|
|
| 1533 m | + | |||
|
|
| 1533 m | + | |||
|
|
| 1533 m | + | |||
|
|
| 1472 m | + | |||
|
|
| 1376 m | + | |||
|
|
| 546 m | + | |||
|
|
| 1062 m | + | |||
|
|
| 1644 m | + | |||
|
|
| 1412 m | + | |||
|
|
| 1310 m | + | |||
|
|
| 1735 m | + | |||
(+): Used for analyses in this paper; (–): Not used for analyses in this paper. (*) From GenBank.