| Literature DB >> 29674869 |
Abstract
Eight new species of the Scaptodrosophila coracina species group are described from China: S. fuscilimbasp. n., S. fusciventriculasp. n., S. helvpectasp. n., S. longispinatasp. n., S. nigrolimbatasp. n., S. trivittatasp. n., S. ventriobscuratasp. n., and S. zebrinasp. n. One known species S. coracina (Kikkawa & Peng) is redescribed. A key to all the examined species in the coracina group is provided. Species delimitations have been improved by integrating the DNA sequences with morphological information. The intra- and interspecific pairwise p-distances (proportional distance) are summarized. Some nucleotide sites with fixed status in the alignment of the COI sequences (662 nucleotide sites in length) are used as "pure" molecular diagnostic characters to delineate species in the coracina group.Entities:
Keywords: China; DNA barcoding; Scaptodrosophila coracina species group; integrated taxonomy
Year: 2018 PMID: 29674869 PMCID: PMC5904429 DOI: 10.3897/zookeys.736.13682
Source DB: PubMed Journal: Zookeys ISSN: 1313-2970 Impact factor: 1.546
Specimens of the coracina group used for DNA barcoding.
| Species | Specimen number | Sex | BOLD | GenBank accession number | Collection site |
|---|---|---|---|---|---|
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| 111019 | ♂ | Iriomote Is., Okinawa, Japan | ||
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| 111023 | ♀ | Iriomote Is., Okinawa, Japan | ||
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| 111026 | ♂ | Samage, Weixi, Yunnan, China | ||
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| 111029 | ♀ | Samage, Weixi, Yunnan, China | ||
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| 111031 | ♂ | Mayanghe, Yanhe, Guizhou, China | ||
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| 111032 | ♂ | Mayanghe, Yanhe, Guizhou, China | ||
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| 111042 | ♀ | Mayanghe, Yanhe, Guizhou, China | ||
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| 110975 | ♂ | Mengdong, Cangyuan, Yunnan, China | ||
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| 110976 | ♂ | Mengdong, Cangyuan, Yunnan, China | ||
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| 110979 | ♀ | Mengdong, Cangyuan, Yunnan, China | ||
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| 110987 | ♂ | Menglun, Mengla, Yunnan, China | ||
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| 110988 | ♂ | Menglun, Mengla, Yunnan, China | ||
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| 110957 | ♂ | Wuzhishan, Hainan, China | ||
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| 110958 | ♀ | Wuzhishan, Hainan, China | ||
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| 110961 | ♂ | Menglun, Mengla, Yunnan, China | ||
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| 110973 | ♂ | Likan, Ximeng, Yunnan, China | ||
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| 110965 | ♂ | Guanlei, Mengla, Yunnan, China | ||
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| 110970 | ♀ | Guanlei, Mengla, Yunnan, China | ||
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| 110994 | ♂ | Menglun, Mengla, Yunnan, China | ||
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| 110991 | ♂ | Menglun, Mengla, Yunnan, China | ||
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| 110992 | ♂ | Menglun, Mengla, Yunnan, China | ||
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| 110989 | ♂ | Likan, Ximeng, Yunnan, China | ||
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| 110990 | ♂ | Likan, Ximeng, Yunnan, China | ||
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| 110985 | ♂ | Mengdong, Cangyuan, Yunnan, China | ||
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| 110984 | ♂ | Mengdong, Cangyuan, Yunnan, China | ||
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| 110995 | ♂ | Xincheng, Yingjiang, Yunnan, China | ||
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| 111005 | ♂ | Arboretum, Ruili, Yunnan, China | ||
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| 111006 | ♂ | Husa, Longchuang, Yunnan, China | ||
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| 110998 | ♀ | Xincheng, Yingjiang, Yunnan, China | ||
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| 111002 | ♂ | Wangtianshu, Mengla, Yunnan, China | ||
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| 111007 | ♂ | Menglun, Mengla, Yunnan, China | ||
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| 111008 | ♂ | Menglun, Mengla, Yunnan, China | ||
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| 111011 | ♀ | Menglun, Mengla, Yunnan, China | ||
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| 111017 | ♀ | Wangtianshu, Mengla, Yunnan, China | ||
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| 111015 | ♂ | Wangtianshu, Mengla, Yunnan, China |
Summary of intra- and interspecific genetic distances in the group.
| Species | N | Intraspecific genetic distances | Interspecific genetic distances |
|---|---|---|---|
| Min. / Max. / Mean ± SD | Min. / Max. / Mean ± SD | ||
|
| 7 | 0.006/0.056/0.0370 ± 0.017 | 0.094/0.137/0.120 0.012 |
|
| 3 | 0.002/ 0.003/ 0.002 ± 0.001 | 0.047/ 0.139/ 0.110 ± 0.032 |
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| 2 | 0.000/ 0.000/ NA | 0.091/ 0.133/ 0.113 ± 0.014 |
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| 6 | 0.000/ 0.011/ 0.005 ± 0.004 | 0.047/ 0.133/ 0.107 ± 0.026 |
|
| 3 | 0.002/ 0.006/ 0.004 ± 0.002 | 0.080/ 0.127/ 0.108 ± 0.015 |
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| 2 | 0.000/ 0.000/ 0.000 | 0.121/ 0.144/ 0.133 ± 0.006 |
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| 2 | 0.005/ 0.005/ NA | 0.065/ 0.139/ 0.107 ± 0.025 |
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| 5 | 0.002/ 0.008/ 0.005 ± 0.002 | 0.008/ 0.137/ 0.107 ± 0.013 |
|
| 5 | 0.002/ 0.029/ 0.013 ± 0.013 | 0.100/ 0.144/ 0.121 ± 0.011 |
N – the numbers of COI sequences involved in distance calculation; Min. – minimum; Max. – maximum; SD – standard deviation; NA – not applicable.
Figure 1.Neighbor-joining (NJ) tree of the coracina group. The numbers around the nodes are bootstrap percentages (BP). BP values lower than 50 are not shown.
Figure 2.Diagnostic nucleotide sites in the alignment of COI sequences (662 bp in length) of the coracina group. Numbers at the top show the positions of the sites in the alignment. Shaded sites are diagnostic for each species. Hyphens (-) indicate missing data.
Figure 3.Frontal, dorsal, and lateral views of male. from Okinawa, Japan (A, C, E) and Guizhou, China (B, D, F). Scale bars: 0.5 mm.
Figure 7.Frontal, dorsal, and lateral views of male. sp. n. (A, C, E); sp. n. (B, D, F). Scale bars: 0.5 mm.
Figure 8.(Kikkawa & Peng, 1938). A and B epandrium (epand), surstylus (sur), and cercus (cerc) (posterior and lateral views, respectively) C and D hypandrium (hypd), parameres (pm), gonopods (gon), aedeagus (aed), and aedeagal apodeme (aed a) (ventral and lateral views, respectively) E oviscapt (lateral view). Scale bars: 0.1 mm.
Figure 16.sp. n. A and B epandrium, surstylus, and cercus (posterior and lateral views) C and D hypandrium, parameres, gonopods, aedeagus, and aedeagal apodeme (ventral and lateral views, respectively) E oviscapt (lateral view). Scale bars: 0.1 mm.
Figure 9.sp. n. A and B epandrium, surstylus, and cercus (posterior and lateral views) C and D hypandrium, parameres, gonopods, aedeagus, and aedeagal apodeme (ventral and lateral views, respectively) E oviscapt (lateral view). Scale bars: 0.1 mm.
Figure 11.sp. n. A and B epandrium, surstylus, and cercus (posterior and lateral views) C and D hypandrium, parameres, gonopods, aedeagus, and aedeagal apodeme (ventral and lateral views, respectively) E oviscapt (lateral view). Scale bars: 0.1 mm.
Figure 15.sp. n. A and B epandrium, surstylus, and cercus (posterior and lateral views) C and D hypandrium, parameres, gonopods, aedeagus, and aedeagal apodeme (ventral and lateral views, respectively) E oviscapt (lateral view). Scale bars: 0.1 mm.
Figure 4.Frontal, dorsal, and lateral views of male. sp. n. (A, C, E); sp. n. (B, D, F). Scale bars: 0.5 mm.
Figure 10.sp. n. A and B epandrium, surstylus, and cercus (posterior and lateral views) C and D hypandrium, parameres, gonopods, aedeagus, and aedeagal apodeme (ventral and lateral views, respectively). Scale bars: 0.1 mm.
Figure 5.Frontal, dorsal, and lateral views of male. sp. n. (A, C, E); sp. n. (B, D, F). Scale bars: 0.5 mm.
Figure 12.sp. n. A and B epandrium, surstylus, and cercus (posterior and lateral views) C and D hypandrium, parameres, gonopods, aedeagus, and aedeagal apodeme (ventral and lateral views, respectively). Scale bars: 0.1 mm.
Figure 6.Frontal, dorsal, and lateral views of male. sp. n. (A, C, E); sp. n. (B, D, F). Scale bars: 0.5 mm.
Figure 13.sp. n. A and B epandrium, surstylus, and cercus (posterior and lateral views) C and D hypandrium, parameres, gonopods, aedeagus, and aedeagal apodeme (ventral and lateral views, respectively). Scale bars: 0.1 mm.
Figure 14.sp. n. A and B epandrium, surstylus, and cercus (posterior and lateral views) C and D hypandrium, parameres, gonopods, aedeagus, and aedeagal apodeme (ventral and lateral views, respectively). Scale bars: 0.1 mm.
| 1 | Body yellowish brown to black; arista with three or four dorsal and two ventral branches in addition to terminal bifurcation; facial carina narrow and flat; prescutellar setae usually large, as long as anterior dorsocentral setae; hypandrium usually with a pair of very large paramedian setae |
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| 2 | Frons yellowish brown with two brown longitudinal stripes (Fig. |
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| – | Frons lacking longitudinal stripes; mesonotum lacking longitudinal stripes |
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| 3 | Hypandrium with pubescence |
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| – | Hypandrium lacking pubescence |
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| 4 | Body brown or black (Fig. |
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| – | Body yellowish brown; paramere sometimes with pubescence; aedeagus lacking membrane apically |
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| 5 | Pleura yellowish, with one brown longitudinal stripe (Fig. |
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| – | Pleura yellowish brown, lacking longitudinal stripe (Fig. |
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| 6 | Gonopods bilobed apically |
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| – | Gonopods fused completely apically |
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| 7 | Pleura yellowish brown, lacking longitudinal stripe (Fig. |
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| – | Pleura yellowish brown, with two brown longitudinal stripes (Fig. |
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| 8 | Paramere with one small projection subbasally (Fig. |
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| – | Paramere lacking projection subbasally; gonopods lacking projection distally; aedeagus inverted triangle shaped in lateral view |
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| 9 | Tergite VI yellowish brown, with dark brown caudal bands (Fig. |
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| – | Tergite VI yellow, lacking band (Fig. |
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