| Literature DB >> 29670073 |
Wei He1, Pengyuan Zhang2, Min Ye3, Zhikang Chen4, Yizi Wang3, Jie Chen2, Fengjuan Yao1.
Abstract
BACKGROUND The aim of this study was to determine whether polymorphisms of the Ras-association domain family 1 isoform A (RASSF1A) gene were associated with ovarian cancer and with tumor grade and stage, which affect the prognosis of ovarian cancer, in women in Southern China. MATERIAL AND METHODS Women from Southern China with histologically confirmed, graded and staged ovarian cancer (n=1,375), and cancer-free controls (n=1,227), provided samples of peripheral blood. DNA was extracted from the blood samples, and five tagging single nucleotide polymorphisms (SNPs) (rs4688728G>T, rs72932987C>T, rs1989839C>T, rs2073497A>C, and rs2236947A>C) were evaluated using an online assay-by-design platform. Polymerase chain reaction (PCR) DNA amplification was performed and computational haplotyping analysis of genetic associations between the five tagging SNPs was performed to identify frequent haplotypes in women with ovarian cancer, and the associations with tumor grade and stage. RESULTS In women in Southern China, the CT genotype of rs1989839 was associated with the patients with ovarian cancer (P=0.001), and was significantly correlated with tumor grade and stage (P=0.008). One of the remaining four SNPs studied, rs2073497A>C showed an association with the prognostic factors of grade and stage, but this association did not reach statistical significance. CONCLUSIONS Polymorphisms of the RASSF1A gene, most significantly the CT genotype of rs1989839, might play a role in the development and prognosis of ovarian cancer in women in Southern China. To our knowledge, this is the first study to demonstrate an association between polymorphisms in the RASSF1A gene in ovarian cancer.Entities:
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Year: 2018 PMID: 29670073 PMCID: PMC5928851 DOI: 10.12659/msm.910058
Source DB: PubMed Journal: Med Sci Monit ISSN: 1234-1010
Summary of patient clinical characteristics.
| Variables | OC cases [n (%)] | Control [n (%)] | ||
|---|---|---|---|---|
| Age | Mean (year) | 57.32 | 58.02 | 0.245 |
| FIGO stages | I | 302 (21.96) | ||
| II | 206 (14.98) | |||
| III | 591 (42.98) | |||
| IV | 276 (20.07) | |||
| Tumor grade | 1 | 286 (20.80) | ||
| 2 | 387 (28.15) | |||
| 3 | 605 (44.00) | |||
| Unclassified | 97 (7.05) | |||
| Histology | Clear cell | 53 (3.85) | ||
| Mucinous | 106 (7.71) | |||
| Endometrioid | 343 (24.95) | |||
| Anaplastic | 2 (0.15) | |||
| Serous | 767 (55.78) | |||
| Adenocarcinoma | 1 (0.01) | |||
| Unclassified | 103 (7.49) |
Logistic regression analyses on associations between RASSF1A rs4688728G>T, rs72932987C>T, rs1989839C>T, rs2073497A>C, and rs2236947A>C polymorphisms and the risk of OC.
| RASSF1A genotype | Cases (n=1375) | Controls (n=1227) | Crude OR (95%Cl) | Adjusted OR (95%Cl) | ||||
|---|---|---|---|---|---|---|---|---|
| n | % | n | % | |||||
| rs4688728G>T | ||||||||
| GG | 211 | 15.35 | 172 | 14.01 | 1.00 | 1.00 | ||
| GT | 566 | 41.16 | 523 | 42.62 | 0.67 (0.31–1.54) | 0.667 | 0.70 (0.32–1.53) | 0.682 |
| TT | 598 | 43.49 | 532 | 43.36 | 0.92 (0.50–1.57) | 0.762 | 0.93 (0.52–1.55) | 0.763 |
| GT+TT | 1164 | 84.65 | 1055 | 85.98 | 0.83 (0.50–1.33) | 0.454 | 0.82 (0.50–1.32) | 0.439 |
| GG+GT | 777 | 56.51 | 695 | 56.63 | 1.00 | 1.00 | ||
| TT | 598 | 43.49 | 532 | 43.36 | 1.17 (0.67–1.79) | 0.255 | 1.19 (0.66–1.78) | 0.356 |
| rs72932987C>T | ||||||||
| CC | 551 | 40.07 | 515 | 41.97 | 1.00 | 1.00 | ||
| CT | 509 | 37.02 | 490 | 39.93 | 0.77 (0.55–1.32) | 0.520 | 0.75 (0.56–1.31) | 0.521 |
| TT | 315 | 22.91 | 222 | 18.10 | 1.14 (0.71–1.83) | 0.671 | 1.15 (0.72–1.84) | 0.657 |
| CT+TT | 824 | 59.93 | 712 | 58.03 | 0.91 (0.56–1.25) | 0.501 | 0.92 (0.56–1.25) | 0.500 |
| CC+CT | 1060 | 77.09 | 1005 | 81.90 | 1.00 | 1.00 | ||
| TT | 315 | 22.91 | 222 | 18.10 | 1.15 (0.71–1.43) | 0.209 | 1.16 (0.71–1.44) | 0.207 |
| rs1989839C>T | ||||||||
| CC | 481 | 34.98 | 639 | 52.78 | 1.00 | 1.00 | ||
| CT | 733 | 53.31 | 417 | 33.99 | 1.89 (1.28–2.41) | 0.001 | 1.86 (1.26–2.39) | 0.001 |
| TT | 161 | 11.71 | 171 | 13.93 | 1.67 (1.10–1.88) | 0.022 | 1.70 (1.03–1.85) | 0.025 |
| CT+TT | 894 | 65.02 | 588 | 47.92 | 1.70 (1.32–2.48) | 0.003 | 1.68 (1.29–2.35) | 0.003 |
| CC+CT | 1214 | 88.29 | 1058 | 86.87 | 1.00 | 1.00 | ||
| TT | 894 | 65.02 | 588 | 47.92 | 1.47 (0.83–2.24) | 0.210 | 1.45 (0.83–2.21) | 0.208 |
| rs2236947A>C | ||||||||
| AA | 83 | 6.04 | 39 | 3.18 | 1.00 | 1.00 | ||
| AC | 240 | 17.45 | 235 | 19.15 | 0.40 (0.15–1.07) | 0.090 | 0.43 (0.16–1.13) | 0.088 |
| CC | 1052 | 76.51 | 953 | 77.67 | 0.52 (0.17–1.03) | 0.059 | 0.53 (0.17–1.06) | 0.057 |
| AC+CC | 1292 | 93.96 | 1188 | 96.82 | 0.41 (0.17–1.02) | 0.055 | 0.43 (0.17–1.06) | 0.066 |
| AA+AC | 323 | 23.49 | 274 | 22.33 | 1.00 | 1.00 | ||
| CC | 1052 | 76.51 | 953 | 77.67 | 0.92 (0.47–1.55) | 0.582 | 0.94 (0.48–1.59) | 0.580 |
| rs2073497A>C | ||||||||
| AA | 166 | 12.07 | 154 | 12.55 | 1.00 | 1.00 | ||
| AC | 522 | 37.96 | 448 | 36.51 | 0.96 (0.57–1.63) | 0.862 | 0.98 (0.58–1.67) | 0.865 |
| CC | 687 | 49.96 | 625 | 50.94 | 1.19 (0.70–2.01) | 0.510 | 1.18 (0.70–2.01) | 0.512 |
| AC+CC | 1209 | 87.92 | 1073 | 87.45 | 1.07 (0.65–1.76) | 0.788 | 1.08 (0.65–1.78) | 0.768 |
| AA+AC | 688 | 50.03 | 602 | 49.06 | 1.00 | 1.00 | ||
| CC | 1209 | 87.92 | 1073 | 87.45 | 1.22 (0.88–1.71) | 0.202 | 1.20 (0.86–1.69) | 0.208 |
Statistically significant (P<0.05).
The genotype frequencies of RASSF1A rs1989839C>T and the clinical features in OC patients.
| Variables | n | CC n (%) | CT n (%) | TT n (%) | ||
|---|---|---|---|---|---|---|
| FIGO stages | I–II | 508 | 203 (39.96) | 223 (43.90) | 82 (16.14) | 0.008 |
| III–IV | 887 | 464 (52.31) | 319 (35.96) | 104 (11.72) | ||
| Tumor grade | 1 | 286 | 143 (50.00) | 101 (35.31) | 42 (14.69) | 0.013 |
| 2–3 | 992 | 609 (61.39) | 277 (27.92) | 4 (10.68) | ||
| Histology | Clear cell | 53 | 22 (41.51) | 23 (43.40) | 8 (15.09) | 0.552 |
| Mucinous | 106 | 41 (38.68) | 43 (40.57) | 22 (20.75) | ||
| Endometrioid | 343 | 137 (39.94) | 141 (41.11) | 65 (18.95) | ||
| Anaplastic | 2 | N/A | N/A | N/A | ||
| Serous | 767 | 289 (37.68) | 331 (43.16) | 147 (19.16) | ||
| Adenocarcinoma | 1 | N/A | N/A | N/A | ||
| Unclassified | 103 | N/A | N/A | N/A |
Statistically significant (P<0.05).
N/A – the comparison was not performed as limited number of cases or unclassified histology type.
Confounding variable (FIGO stages).
| Confounding variables | I or II cases [n (%)] | III or IV cases [n (%)] | ||
|---|---|---|---|---|
| Age | Mean ±SD (year) | 55.32±10.66 | 57.02±9.66 | 0.330 |
Confounding variable (tumor grade).
| Confounding variables | Grade 1 cases [n (%)] | Grade 2 or 3 cases [n (%)] | ||
|---|---|---|---|---|
| Age | Mean ±SD (year) | 59.20±9.35 | 58.89±10.10 | 0.266 |
Haplotype analysis.
| Haplotype | OC cases (n=1375) | Controls (n=1227) | p | OR (95% Cl) |
|---|---|---|---|---|
| n (frequency) | n (frequency) | |||
| CACTT | 24.87 (0.045) | 39.91 (0.070) | 0.017 | 2.181 (1.376–4.555) |
| CATCT | 29.49 (0.053) | 25.92 (0.045) | 0.514 | 1.199 (0.696–2.066) |
| CACCG | 33.19 (0.059) | 30.28 (0.053) | 0.583 | 1.154 (0.692–1.922) |
| CACCT | 25.48 (0.046) | 30.45 (0.053) | 0.598 | 0.864 (0.502–1.488) |
| CATTT | 20.16 (0.036) | 29.36 (0.051) | 0.232 | 0.702 (0.392–1.257) |
| CCTTT | 49.92 (0.089) | 31.84 (0.056) | 0.041 | 1.613 (1.036–2.726) |
| CCTCT | 29.12 (0.052) | 16.03 (0.028) | 0.028 | 1.659 (1.098–2.648) |
| CCCTG | 39.73 (0.071) | 16.34 (0.029) | 0.336 | 1.682 (0.485–3.845) |
| CCCTT | 40.85 (0.073) | 46.19 (0.081) | 0.690 | 0.914 (0.587–1.422) |
| CCCCT | 123.39 (0.221) | 149.76 (0.262) | 0.135 | 0.805 (0.606–1.070) |
| CCCCG | 9.65 (0.017) | 25.88 (0.045) | 0.058 | 0.575 (0.177–1.325) |
Statistically significant (P<0.05).