Literature DB >> 29661012

Using synthetic oligonucleotides as standards in probe-based qPCR.

Jillian Conte1,2, Margret J Potoczniak3, Shanan S Tobe3,4.   

Abstract

Real-time PCR (qPCR) is widely used in the life sciences. For quantifying DNA, a standard curve is required. Common methods for standard development are time consuming, costly, necessitate a specific skill set, and pose a contamination risk. Using a targeted synthetic oligonucleotide, such as a gBlocks® Gene Fragment, overcomes these drawbacks and provides researchers an accurate and quick solution to standard development. Here, we demonstrate that using a gBlocks fragment as a standard provides comparable sensitivity, reliability, and assay performance to a purified amplicon standard.

Entities:  

Keywords:  DNA standard; gBlocks®; qPCR; synthetic oligonucleotide

Mesh:

Substances:

Year:  2018        PMID: 29661012     DOI: 10.2144/btn-2018-2000

Source DB:  PubMed          Journal:  Biotechniques        ISSN: 0736-6205            Impact factor:   1.993


  12 in total

1.  Associative effects of wet distiller's grains plus solubles and tannin-rich peanut skin supplementation on in vitro rumen fermentation, greenhouse gas emissions, and microbial changes1.

Authors:  Byeng Ryel Min; Lana Castleberry; Heather Allen; David Parker; Heidi Waldrip; David Brauer; William Willis
Journal:  J Anim Sci       Date:  2019-11-04       Impact factor: 3.159

2.  ELEquant: a developmental framework and validation of forensic and conservation real-time PCR assays.

Authors:  Jillian Conte; Margret J Potoczniak; Courtney Mower; Shanan S Tobe
Journal:  Mol Biol Rep       Date:  2019-02-05       Impact factor: 2.316

3.  Generation of Humanized Zebrafish Models for the In Vivo Assessment of Antisense Oligonucleotide-Based Splice Modulation Therapies.

Authors:  Renske Schellens; Erik de Vrieze; Ralph Slijkerman; Hannie Kremer; Erwin van Wijk
Journal:  Methods Mol Biol       Date:  2022

4.  DNA fingerprinting: an effective tool for taxonomic identification of precious corals in jewelry.

Authors:  Bertalan Lendvay; Laurent E Cartier; Mario Gysi; Joana B Meyer; Michael S Krzemnicki; Adelgunde Kratzer; Nadja V Morf
Journal:  Sci Rep       Date:  2020-05-19       Impact factor: 4.379

5.  Development of a quantitative PCR assay for the detection and enumeration of a potentially ciguatoxin-producing dinoflagellate, Gambierdiscus lapillus (Gonyaulacales, Dinophyceae).

Authors:  Anna Liza Kretzschmar; Arjun Verma; Gurjeet Kohli; Shauna Murray
Journal:  PLoS One       Date:  2019-11-15       Impact factor: 3.240

6.  Interaction of field realistic doses of clothianidin and Varroa destructor parasitism on adult honey bee (Apis mellifera L.) health and neural gene expression, and antagonistic effects on differentially expressed genes.

Authors:  Nuria Morfin; Paul H Goodwin; Ernesto Guzman-Novoa
Journal:  PLoS One       Date:  2020-02-20       Impact factor: 3.240

7.  Single well, single-common primer pair, dual probe, duplex qPCR assay for the quantification of mRNA splicing variants.

Authors:  Janice Wang; Winifred P Wong; Emma O Link; Shantel Olivares; Cade T Adelman; Anne S Henkel; Malek El Muayed
Journal:  Biol Methods Protoc       Date:  2021-02-09

8.  Monitoring of diverse enteric pathogens across environmental and host reservoirs with TaqMan array cards and standard qPCR: a methodological comparison study.

Authors:  Rachael Lappan; Rebekah Henry; Steven L Chown; Stephen P Luby; Ellen E Higginson; Lamiya Bata; Thanavit Jirapanjawat; Christelle Schang; John J Openshaw; Joanne O'Toole; Audrie Lin; Autiko Tela; Amelia Turagabeci; Tony H F Wong; Matthew A French; Rebekah R Brown; Karin Leder; Chris Greening; David McCarthy
Journal:  Lancet Planet Health       Date:  2021-05

9.  A qPCR to quantify Wolbachia from few Onchocerca volvulus microfilariae as a surrogate for adult worm histology in clinical trials of antiwolbachial drugs.

Authors:  Stefan Schlabe; Patricia Korir; Christine Lämmer; Frederic Landmann; Bettina Dubben; Marianne Koschel; Anna Albers; Linda Batsa Debrah; Alexander Yaw Debrah; Marc P Hübner; Kenneth Pfarr; Ute Klarmann-Schulz; Achim Hoerauf
Journal:  Parasitol Res       Date:  2022-01-10       Impact factor: 2.289

10.  A diagnostic LAMP assay for rapid identification of an invasive plant pest, fall armyworm Spodoptera frugiperda (Lepidoptera: Noctuidae).

Authors:  Arati Agarwal; Lea Rako; Mark K Schutze; Melissa L Starkie; Wee Tek Tay; Brendan C Rodoni; Mark J Blacket
Journal:  Sci Rep       Date:  2022-01-21       Impact factor: 4.996

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