| Literature DB >> 29653565 |
Song Wang1, Chenjun Guo1, Mengsi Yu2, Xiaona Ning1, Bo Yan3, Jing Zhao3, Angang Yang3, Hong Yan4,5.
Abstract
BACKGROUND: This study is aimed to screen out the microRNAs (miRNAs) associated with H2O2 induced oxidative stress in human lens epithelial B3 (HLE-B3) cell lines and investigate their relations with the progression of age-related nuclear cataract.Entities:
Keywords: Age-related nuclear cataract; Bioinformatics analysis; Oxidative stress; microRNA
Mesh:
Substances:
Year: 2018 PMID: 29653565 PMCID: PMC5899325 DOI: 10.1186/s12886-018-0766-6
Source DB: PubMed Journal: BMC Ophthalmol ISSN: 1471-2415 Impact factor: 2.209
Fig. 1Establishment of H2O2 induced oxidative stress model in HLE-B3 cells. a The viability of HLE-B3 cells decreased after H2O2 treatment in both dose-dependent and time-dependent manner. b Cell apoptosis of HLE-B3 cells after H2O2 exposure for 12, 24 and 48 h was determined by flow cytometry with Annexin-V and PI staining. c Cell nucleus apoptosis of HLE-B3 cells after H2O2 exposure for 12, 24 and 48 h was determined by Hoechst 33,258 staining. Results are presented as mean ± SD by t-test. (n = 3) **P < 0.01, ***P < 0.001
Fig. 2Microarray screening for differentially expressed miRNAs which were induced by oxidative stress in HLE-B3 cells. a Heat map of miRNAs that are differentially expressed between the H2O2-treated group and the control group. b Quantitative real-time RT-PCR validation of five up-regulated and two down-regulated miRNAs (mean ± SD, n = 3)
Fold change of the seven selected miRNAs and their forward primer sequences used for RT-PCR
| miRNA Name | Fold Change | Forward Primer for RT-PCR |
|---|---|---|
| miR-630 | 4.14 | GCGAGTATTCTGTACCAGGGAAGGT |
| miR-222-5p | 3.84 | CGCTCAGTAGCCAGTGTAGATCCT |
| miR-210-3p | 3.23 | CTGTGCGTGTGACAGCGG |
| miR-34a-5p | 2.59 | CTGGCAGTGTCTTAGCTGGTTGT |
| miR-34b-5p | 2.44 | GCGTAGGCAGTGTCATTAGCTGATTG |
| miR-335-3p | 0.45 | CGGCGTTTTTCATTATTGCTCCTGACC |
| miR-15b-3p | 0.33 | CGGGCGAATCATTATTTGCTGCTCTA |
Fig. 3Relevance of expression levels of the seven miRNAs to the severity of lens nuclear opacity. Forty five samples were divided into three groups according to their grading of nuclear opacity. Each group contained 15 samples. The expression level of each miRNA in 0 < N ≤ 2 group was defined as 1. Up-regulation of miR-34a-5p and miR-630 are closely related to a higher severity score of nuclear cataract, while down-regulation of miR-335-3p is associated with the increase of nuclear opacity (mean ± SD, n = 3). *P < 0.05, **P < 0.01
Fig. 4The expression of three key miRNAs in HLE-B3 cells were assessed by FISH. (400×, scale bar is 25 μm)
Fig. 5Target classification of the three selected miRNAs. a Target selection of miR-34a-5p. Sixty-eight target genes of miR-34a-5p were clustered in the process of response to stress. b Target selection of miR-630. Fifty target genes of miR-630 were clustered in the process of response to stress. c Target selection of miR-335-3p. Fifty-four target genes of miR-335-3p were clustered in the process of response to stress
Fig. 6Network of the miRNAs and their target genes in the process of response to stress. Red circles, miRNAs; black dots, target genes regulated by one miRNA; green squares, target genes regulated by two miRNAs; blue triangle, target gene regulated by three miRNAs
Target genes clustered in response to stress by PANTHER classification system
| MiRNA | Clustered target genes |
|---|---|
| miR-34a-5p | ATG2A, CALCR, SYVN1, RAD9A, TP53INP2, MAPK14, MAPK1, NR4A2, BTBD11, HSPB6, NMUR1, WIPI2, CRHR1, MAP3K15, FIGN, PTK6, TRPV4, BCL6, RRAGD, ATG4B, MAP2K1, TNFRSF11B, PPARG, CCL22, GABARAPL2, ERLIN2, PVR, SUGT1, SRC, GPR111, NFKBIA, MAPK13, XPC, GLP1R, FRK, C11orf34, TLR4, TP53INP1, SGTA, ERLIN1, UBA1, TMX4, UCN2, UNC45A, APITD1, CDCA5, HEBP1, ATM, PSME1, CXCL11, ATG5, MAP3K3, RAD9B, PSME3, DDB1, ULBP2, FES, BCAS3, PRKAG1, PRKAG3, PLA2G6, PPP6C, RAD51, IRAK2, UBE2NL, MAP4K4, GPX3,CXCL10 |
| miR-630 | WEE2, MAP3K2, MAP4K3, STK39, DEFB132, MAPK14, ANKRD6, RAD1, ATG12, SGTB, MAP3K1, YES1, RB1CC1, BCL2L2, EDNRB, WEE1, FER, PAK7, DCLRE1C,UBXN2A, RAD18, PARP3, SLK, ATG2B, TMX3, BTBD3, TMX1, GPR37, CDC7, PPP2CA, IRAK3, TP63, RHD, FRK, CXCL13, POLR2D, GPX8, ITPR1, TLR4, SLK, UBE2N, SRPK2, CUL4B, TMX4, NBEAL1, CD226, CCL11, PIK3CA, DDB1, NLK |
| miR-335-3p | MAPK9, CADM1, MAP3K2, PRKAA2, MAP4K3, NR4A3, GRAP, MAPK14, EIF2AK4, BTBD11, NLK, ANKRD17, SLA, CCS, UBE2B, FIGN, PPP6C, TXK, ERCC4, PDGFA, GPR126, BCL2L2, SMG1, WEE1, CCL5, UBXN2A, PPARG, FAS, ERLIN2, RYR2, CDC7, SUGT1, MED1, AQP4, TDG, PTH2R, IRAK3, PMS1, UBA6, MICA, TP63, HMGA2, TNFAIP3, CUL4B, SMAP1, PAK3, GABARAPL1, UBE2V2, ATM, MSH3, MAPK10, RAD9B, TMEM161B,RAB23 |
Genes targeted by at least two miRNAs in the cluster of response to stress
| Co-regulated miRNAs | Target genes |
|---|---|
| miR-34a-5p/miR-630 | DDB1, TMX4, FRK, TLR4 |
| miR-34a-5p/miR-335-3p | PPARG, ERLIN2, RAD9B, BTBD11, PPP6C, ATM, FIGN, SUGT1 |
| miR-630/miR-335-3p | UBXN2A, BCL2L2, MAP3K2, MAP4K3, NLK, TP63, WEE1, CUL4B, IRAK3, CDC7 |
| miR-34a-5p/miR-630/miR-335-3p | MAPK14 |
Fig. 7Western blot analysis of MAPK14 and p-MAPK14 in H2O2 treated HLE-B3 cells. a The expression level of MAPK14 remained the same after 24 h H2O2 treatment while p-MAPK14 increased significantly. b Quantitative analysis of the relative intensity of protein levels in HLE-B3 cells. (n = 3,*P < 0.05)