Literature DB >> 29651662

Quantifying learning in biotracer studies.

Christopher J Brown1, Michael T Brett2, Maria Fernanda Adame3, Ben Stewart-Koster3, Stuart E Bunn3.   

Abstract

Mixing models have become requisite tools for analyzing biotracer data, most commonly stable isotope ratios, to infer dietary contributions of multiple sources to a consumer. However, Bayesian mixing models will always return a result that defaults to their priors if the data poorly resolve the source contributions, and thus, their interpretation requires caution. We describe an application of information theory to quantify how much has been learned about a consumer's diet from new biotracer data. We apply the approach to two example data sets. We find that variation in the isotope ratios of sources limits the precision of estimates for the consumer's diet, even with a large number of consumer samples. Thus, the approach which we describe is a type of power analysis that uses a priori simulations to find an optimal sample size. Biotracer data are fundamentally limited in their ability to discriminate consumer diets. We suggest that other types of data, such as gut content analysis, must be used as prior information in model fitting, to improve model learning about the consumer's diet. Information theory may also be used to identify optimal sampling protocols in situations where sampling of consumers is limited due to expense or ethical concerns.

Keywords:  Bayesian; Carbon isotopes; Diet; Food web; Mixing model; Nitrogen isotopes; R package

Mesh:

Substances:

Year:  2018        PMID: 29651662     DOI: 10.1007/s00442-018-4138-y

Source DB:  PubMed          Journal:  Oecologia        ISSN: 0029-8549            Impact factor:   3.225


  11 in total

1.  Source partitioning using stable isotopes: coping with too many sources.

Authors:  Donald L Phillips; Jillian W Gregg
Journal:  Oecologia       Date:  2003-05-21       Impact factor: 3.225

2.  Incorporating uncertainty and prior information into stable isotope mixing models.

Authors:  Jonathan W Moore; Brice X Semmens
Journal:  Ecol Lett       Date:  2008-02-20       Impact factor: 9.492

3.  Using stable CNS isotopes to evaluate estuarine fisheries condition and health.

Authors:  Brian Fry
Journal:  Isotopes Environ Health Stud       Date:  2013-06-20       Impact factor: 1.675

4.  Unifying error structures in commonly used biotracer mixing models.

Authors:  Brian C Stock; Brice X Semmens
Journal:  Ecology       Date:  2016-09-19       Impact factor: 5.499

5.  An assessment of assumptions and uncertainty in deuterium-based estimates of terrestrial subsidies to aquatic consumers.

Authors:  Michael T Brett; Gordon W Holtgrieve; Daniel E Schindler
Journal:  Ecology       Date:  2018-05       Impact factor: 5.499

6.  Source partitioning using stable isotopes: coping with too much variation.

Authors:  Andrew C Parnell; Richard Inger; Stuart Bearhop; Andrew L Jackson
Journal:  PLoS One       Date:  2010-03-12       Impact factor: 3.240

7.  Merging resource availability with isotope mixing models: the role of neutral interaction assumptions.

Authors:  Justin D Yeakel; Mark Novak; Paulo R Guimarães; Nathaniel J Dominy; Paul L Koch; Eric J Ward; Jonathan W Moore; Brice X Semmens
Journal:  PLoS One       Date:  2011-07-07       Impact factor: 3.240

8.  A Fatty Acid Based Bayesian Approach for Inferring Diet in Aquatic Consumers.

Authors:  Aaron W E Galloway; Michael T Brett; Gordon W Holtgrieve; Eric J Ward; Ashley P Ballantyne; Carolyn W Burns; Martin J Kainz; Doerthe C Müller-Navarra; Jonas Persson; Joseph L Ravet; Ursula Strandberg; Sami J Taipale; Gunnel Alhgren
Journal:  PLoS One       Date:  2015-06-26       Impact factor: 3.240

9.  Quantifying inter- and intra-population niche variability using hierarchical bayesian stable isotope mixing models.

Authors:  Brice X Semmens; Eric J Ward; Jonathan W Moore; Chris T Darimont
Journal:  PLoS One       Date:  2009-07-09       Impact factor: 3.240

10.  Searching for the true diet of marine predators: incorporating Bayesian priors into stable isotope mixing models.

Authors:  André Chiaradia; Manuela G Forero; Julie C McInnes; Francisco Ramírez
Journal:  PLoS One       Date:  2014-03-25       Impact factor: 3.240

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  3 in total

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Authors:  Carrin M Halffman; Ben A Potter; Holly J McKinney; Takumi Tsutaya; Bruce P Finney; Brian M Kemp; Eric J Bartelink; Matthew J Wooller; Michael Buckley; Casey T Clark; Jessica J Johnson; Brittany L Bingham; François B Lanoë; Robert A Sattler; Joshua D Reuther
Journal:  Sci Adv       Date:  2020-09-04       Impact factor: 14.136

2.  Assessing the Reliability of Quantitative Fatty Acid Signature Analysis and Compound-Specific Isotope Analysis-Based Mixing Models for Trophic Studies.

Authors:  Igor Prokopkin; Olesia Makhutova; Elena Kravchuk; Nadezhda Sushchik; Olesia Anishchenko; Michail Gladyshev
Journal:  Biomolecules       Date:  2021-10-27

3.  Exploring source differences on diet-tissue discrimination factors in the analysis of stable isotope mixing models.

Authors:  Wilbert T Kadye; Suzanne Redelinghuys; Andrew C Parnell; Anthony J Booth
Journal:  Sci Rep       Date:  2020-09-25       Impact factor: 4.379

  3 in total

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