| Literature DB >> 29644922 |
Hamid Nomani1, Hamid Khanmohamadian1, Asad Vaisi-Raygani2, Ebrahim Shakiba1, Maryam Tanhapour2, Zohreh Rahimi1,3.
Abstract
INTRODUCTION: End-stage renal disease (ESRD) is associated with critical kidney illness that seriously affects the lifespan. Genetic factors and oxidative stress could play critical role in the development of ESRD. We assessed the association between chemerin rs17173608 T/G and vaspin rs2236242 T/A genes variants with the risk of ESRD and their correlation with plasma malondialdehyde (MDA) level.Entities:
Keywords: End-stage renal disease; chemerin; malondialdehyde (MDA); oxidative stress; single nucleotide polymorphism; tetra primer-ARMS-PCR; vaspin
Mesh:
Substances:
Year: 2018 PMID: 29644922 PMCID: PMC6014516 DOI: 10.1080/0886022X.2018.1459698
Source DB: PubMed Journal: Ren Fail ISSN: 0886-022X Impact factor: 2.606
The used primers for detection of single-nucleotide polymorphisms in chemerin rs17173608 and vaspin rs2236242 genes.
| Gene variant | Primers | Sequence (5′ to 3′) |
|---|---|---|
| Chemerin rs17173608 | FI (G allele) | ATTGCTATAGTCCAGTGCCCTTCG |
| RI (T allele) | CCAGTTCCCTCTGTCGGCTTAA | |
| FO | GTCAGACCCATGCAGTTTTCAAAC | |
| RO | GAGTTCCTCTCTCAAGCATCAGGG | |
| FI (T allele) | AAGACGCCGCTTCTGTGCACT | |
| Vaspin rs2236242 | RI (A allele) | CACAGGGACCCAGGATAACTTGCT |
| FO | GGAGGCAGACCAGGCACTAGAAA | |
| RO | ACCATCTCTCTGGCTTCAGGCTTC |
FI: forward inner; RI: reverse inner; FO: forward outer; RO: reverse outer.
Characteristics and distribution of risk factors in patients with end stage renal disease (ESRD) and control subjects in a population from Western Iran.
| Parameter | Patients with ESRD ( | Control subjects ( | |
|---|---|---|---|
| Age | 58.1 ± 13.3 | 55.7 ± 7.3 | .27 |
| Gender (male/female) | 89 (66.9%)/44 (33.1%) | 85 (62%)/52 (38%) | .4 |
| MDA (µM) |
Median and interquartile range (IQR) for non-normally distributed data, and percentages for categorical data.
Odd ratio and distribution of chemerin rs17173608 and alleles with respect to T/T or T and vaspin rs2236242 genotypes and alleles with respect to T/T or T respectively in ESRD patients after adjusted sex and age.
| ESRD patients ( | Control subjects ( | |
|---|---|---|
| Chemerin genotypes | ||
| T/T | 91 (82.7%) | 95 (72.5%) |
| T/G | 14 (12.7%) | 29 (22.1%) |
| G/G | 5 (4.5%) | 7 (5.3%) |
| Dominant | ||
| T/G + G/G vs. T/T | ( | ( |
| Codominant | ||
| T/G vs. T/T | ( | ( |
| Chemerin alleles | ||
| T | ||
| G | 0.79 (0.54–1.1, | |
| Vaspin genotypes | ||
| T/T | 54 (49.1%) | 66 (50.4%) |
| T/A | 44 (40%) | 51 (38.9%) |
| A/A | 12 (10.9%) | 14 (10.7%) |
| Dominant model of vaspin | ||
| T/T | 54 (49.1%) | 66 (50.4%) |
| T/A+A/A | 56 (50.9%) | 65 (49.6%) |
| Vaspin alleles | ||
| T | ||
| A | 1.02 (0.84–1.3, |
Odd ratio is an estimate relative risk for disease that was calculated and 95% confidence interval was obtained by using χ2 regression binary logistic analysis.
Comparison of MDA concentration level between dominant model of chemerin genotypes (G/G/+ T/G vs. T/T) in ESRD subjects and control group.
| Chemerin | ESRD patients | Control subjects | |
|---|---|---|---|
| T/T MDA (µM) | 2.04 (1.77–2.3) | 1.06 (0.89–1.31) | <.001 |
| T/G + G/G MDA (µM) | 2 (108–2.2) | 1.01 (0.9–1.2) | .001 |
A non-parametric Mann–Whitney U-test (median and interquartile range (IQR) for non-normally distributed data) was used to calculate the correlation value of serum MDA with dominant model of chemerin genotypes (G/G/+ T/G vs. T/T) patients and control subjects.
Comparison of MDA concentration level between dominant model of vaspin genotypes (A/A + T/A vs. T/T) in ESRD subjects and control group.
| Vaspin | ESRD patients | Control subjects | |
|---|---|---|---|
| T/T MDA (µM) | 2.1 (1.7–2.3) | 1.05 (0.85–1.25) | <.001 |
| A/A + T/A MDA (µM) | 2.1 (1.8–2.3) | 1.1 (0.93–1.28) | .001 |
A non-parametric Mann–Whitney U-test (Median and interquartile range (IQR) for non-normally distributed data) was used to calculate the correlation value of serum MDA with dominant model of chemerin genotypes (A/A + T/A vs. T/T) patients and control subjects.
Haplotype analysis between chemerin rs17173608 G allele and vaspin rs2236242 a allele in ESRD patients compared with control group. Haplotype frequencies association with response (n = 241, crude analysis).
| Chemerin | Vaspin | Group.Ca | Group.Co | OR (95% CI) | |
|---|---|---|---|---|---|
| T | T | 44 (40%) | 49 (37.4%) | – | – |
| A | T | 10 (9.1%) | 17 (37.4%) | 0.65 (0.27–1.6) | .65 |
| T | G | 47 (42.7%) | 46 (35.1%) | 1.07 (0.8–1.42) | .66 |
| A | G | 9 (8.2%) | 18 (14.5%) | 0.81 (0.6–1.1) | .16 |
Global haplotype association p-value: .41.