| Literature DB >> 29637026 |
Jonathan G Escobar-Flores1, Carlos A Lopez-Sanchez2, Sarahi Sandoval3, Marco A Marquez-Linares1, Christian Wehenkel2.
Abstract
The Californian single-leaf pinyon (Pinus monophylla var. californiarum), a subspecies of the single-leaf pinyon (the world's only one-needled pine), inhabits semi-arid zones of the Mojave Desert (southern Nevada and southeastern California, US) and also of northern Baja California (Mexico). This tree is distributed as a relict subspecies, at elevations of between 1,010 and 1,631 m in the geographically isolated arid Sierra La Asamblea, an area characterized by mean annual precipitation levels of between 184 and 288 mm. The aim of this research was (i) to estimate the distribution of P. monophylla var. californiarum in Sierra La Asamblea by using Sentinel-2 images, and (ii) to test and describe the relationship between the distribution of P. monophylla and five topographic and 18 climate variables. We hypothesized that (i) Sentinel-2 images can be used to predict the P. monophylla distribution in the study site due to the finer resolution (×3) and greater number of bands (×2) relative to Landsat-8 data, which is publically available free of charge and has been demonstrated to be useful for estimating forest cover, and (ii) the topographical variables aspect, ruggedness and slope are particularly important because they represent important microhabitat factors that can determine the sites where conifers can become established and persist. An atmospherically corrected a 12-bit Sentinel-2A MSI image with 10 spectral bands in the visible, near infrared, and short-wave infrared light region was used in combination with the normalized differential vegetation index (NDVI). Supervised classification of this image was carried out using a backpropagation-type artificial neural network algorithm. Stepwise multiple linear binominal logistical regression and Random Forest classification including cross validation were used to model the associations between presence/absence of P. monophylla and the five topographical and 18 climate variables. Using supervised classification of Sentinel-2 satellite images, we estimated that P. monophylla covers 6,653 ± 319 ha in the isolated Sierra La Asamblea. The NDVI was one of the variables that contributed most to the prediction and clearly separated the forest cover (NDVI > 0.35) from the other vegetation cover (NDVI < 0.20). Ruggedness was the most influential environmental predictor variable, indicating that the probability of occurrence of P. monophylla was greater than 50% when the degree of ruggedness terrain ruggedness index was greater than 17.5 m. The probability of occurrence of the species decreased when the mean temperature in the warmest month increased from 23.5 to 25.2 °C. Ruggedness is known to create microclimates and provides shade that minimizes evapotranspiration from pines in desert environments. Identification of the P. monophylla stands in Sierra La Asamblea as the most southern populations represents an opportunity for research on climatic tolerance and community responses to climate variability and change.Entities:
Keywords: Baja California; Classification; DEM; Forest; Kappa; NDVI; Neural net; Remote sensing; Ruggedness; Sentinel-2
Year: 2018 PMID: 29637026 PMCID: PMC5889705 DOI: 10.7717/peerj.4603
Source DB: PubMed Journal: PeerJ ISSN: 2167-8359 Impact factor: 2.984
Figure 1Map of Sierra La Asamblea.
The black circles indicate georeferenced sites occupied by Pinus monophylla.
Sentinel-2 spectral bands used to predict the Pinus monophylla forest cover.
| Band | Central wavelength (μm) | Resolution (m) |
|---|---|---|
| Band 2—Blue | 0.490 | 10 |
| Band 3—Green | 0.560 | 10 |
| Band 4—Red | 0.665 | 10 |
| Band 5—Vegetation red edge | 0.705 | 20 |
| Band 6—Vegetation red edge | 0.740 | 20 |
| Band 7—Vegetation red edge | 0.783 | 20 |
| Band 8—NIR | 0.842 | 10 |
| Band 8A—Vegetation red edge | 0.865 | 20 |
| Band 11—SWIR | 1.610 | 20 |
| Band 12—SWIR | 2.190 | 20 |
Topographical and climatic variables considered in the study.
| Variable | Abbreviation | Units | Mean | SD | Max | Min |
|---|---|---|---|---|---|---|
| Terrain ruggedness index | TRI | m | 20.33 | 6.66 | 35.90 | 4.69 |
| Vector ruggedness measure | VRM | NA | 0.005 | 0.007 | 0.13 | 0 |
| Slope | S | ° | 28.38 | 8.92 | 48.34 | 3.42 |
| Aspect | A | ° | 190.51 | 68.72 | 350.44 | 20.55 |
| Elevation | E | m | 1,302.41 | 124.96 | 1,631 | 1,010 |
| Mean annual temperature | MAT | °C | 16.57 | 0.38 | 17.4 | 15.5 |
| Mean annual precipitation | MAP | mm | 229.56 | 19.95 | 288 | 184 |
| Growing season precipitation, April–September | GSP | mm | 79.08 | 9.60 | 108 | 57 |
| Mean temperature in the coldest month | MTCM | °C | 10.85 | 0.37 | 11.7 | 9.8 |
| Minimum temperature in the coldest month | MMIN | °C | 3.42 | 0.41 | 4.3 | 2.3 |
| Mean temperature in the warmest month | MTWM | °C | 24.52 | 0.31 | 25.2 | 23.5 |
| Maximum temperature in the warmest month | MMAX | °C | 34.10 | 0.31 | 34.7 | 33.1 |
| Julian date of the last freezing data of spring | SDAY | Days | 82.57 | 7.86 | 106 | 60 |
| Julian date of the first freezing data of autumn | FDAY | Days | 331.28 | 2.62 | 339 | 324 |
| Length of the frost-free period | FFP | Days | 259.22 | 8.36 | 285 | 240 |
| Degree days ˃5 °C | DD5 | Days | 4,245.26 | 137.52 | 4,550 | 3,852 |
| Degree days ˃5 °C accumulating within the frost-free period | GSDD5 | Days | 3,491.82 | 164.76 | 3,944 | 2,995 |
| Julian date when the sum degree days ˃5 °C reaches 100 | D100 | Days | 17.07 | 1.10 | 20 | 15 |
| Degree days ˂0 °C | DD0 | Days | 0 | 0 | 0 | 0 |
| Minimum degree days ˂0 °C | MMINDD0 | Days | 8.07 | 20.29 | 145 | 45 |
| Spring precipitation | SPRP | mm | 7.54 | 0.71 | 10 | 6 |
| Summer precipitation | SMRP | mm | 43.74 | 6.29 | 62 | 29 |
| Winter precipitation | WINP | mm | 110.93 | 7.93 | 133 | 93 |
Note:
Variables for which no significant difference between the medians was obtained after Bonferroni correction (α = 0.0005) were excluded from further analysis.
Figure 2Average spectral signatures of cover vegetation in Sierra La Asamblea, Baja California.
Figure 3(A) Estimated land cover classes using BPNN classification in Sierra La Asamblea. (B) Probability map of class assignment.
Estimated error matrix based of sample counts (n) from the accuracy assessment sample.
| Classes | Reference | Total | Map area (ha) | |||||
|---|---|---|---|---|---|---|---|---|
| P | S | C | WV | |||||
| 522 | 0 | 14 | 0 | 536 | 5,395 | 0.169 | ||
| 24 | 619 | 119 | 2 | 764 | 12,309 | 0.387 | ||
| 50 | 0 | 348 | 7 | 405 | 8,206 | 0.258 | ||
| 0 | 0 | 20 | 418 | 438 | 5,913 | 0.186 | ||
| 596 | 619 | 501 | 427 | 2,143 | 31,823 | 1 | ||
Notes:
Map classes are the rows while the reference classes are the columns.
P, Pinus monophylla; S, shrub; C, chaparral; NAP, no apparent vegetation; W, proportion of the area mapped as class i.
Error matrix of four classes with cell entries (p) based on Table 3 and expressed in terms of proportion of area.
| Classes | References | Accuracy | ||||||
|---|---|---|---|---|---|---|---|---|
| P | S | C | WV | User’s | Producer’s | Overall | ||
| 0.1651 | 0.0000 | 0.0044 | 0.0000 | 0.974 ± 0.07 | 0.790 ± 0.04 | 0.877 ± 0.01 | ||
| 0.0122 | 0.3134 | 0.0602 | 0.0010 | 0.810 ± 0.02 | 1.000 | |||
| 0.0318 | 0.0000 | 0.2216 | 0.0045 | 0.859 ± 0.01 | 0.752 ± 0.07 | |||
| 0.0000 | 0.0000 | 0.0085 | 0.1773 | 0.954 ± 0.002 | 0.970 ± 0.02 | |||
| 0.2091 | 0.3134 | 0.2947 | 0.1828 | |||||
Notes:
Accuracy measures are presented with a 95% confidence interval. Map classes (rows), reference classes (columns).
P, Pinus monophylla; S, shrub; C, chaparral; NAP, no apparent vegetation.
Results of the multiple linear binomial logistic regression model (AIC = 601.8; residual deviance = 593.85 on 588 degrees of freedom), TRI, terrain ruggedness index; VRM, vector ruggedness measure; MTWM, mean temperature in the warmest month.
| Variable | Estimate | Std. Error | Pr(>| | |
|---|---|---|---|---|
| Intercept | 25.351 | 8.895 | 2.850 | 0.0044 |
| MTWM | −1.159 | 0.362 | −3.201 | 0.0014 |
| TRI | 0.178 | 0.015 | 11.200 | <2e−16 |
| VRM | 28.476 | 13.847 | 2.056 | 0.0397 |