Literature DB >> 29633965

Crystal structure of chorismate mutase from Burkholderia phymatum.

Oluwatoyin A Asojo1, Sandhya Subramanian2, Jan Abendroth2, Ilyssa Exley2, Donald D Lorimer2, Thomas E Edwards2, Peter J Myler2.   

Abstract

The bacterium Burkholderia phymatum is a promiscuous symbiotic nitrogen-fixating bacterium that belongs to one of the largest groups of Betaproteobacteria. Other Burkholderia species are known to cause disease in plants and animals, and some are potential agents for biological warfare. Structural genomics efforts include characterizing the structures of enzymes from pathways that can be targeted for drug development. As part of these efforts, chorismate mutase from B. phymatum was produced and crystallized, and a 1.95 Å resolution structure is reported. This enzyme shares less than 33% sequence identity with other homologs of known structure. There are two classes of chorismate mutase: AroQ and AroH. The bacterial subclass AroQγ has reported roles in virulence. Chorismate mutase from B. phymatum has the prototypical AroQγ topology and retains the characteristic chorismate mutase active site. This suggests that substrate-based chorismate mutase inhibitors will not be specific and are likely to affect beneficial bacteria such as B. phymatum.

Entities:  

Keywords:  Burkholderia phymatum; Seattle Structural Genomics Center for Infectious Disease; chorismate mutase; isomerase; shikimate pathway; structural genomics

Mesh:

Substances:

Year:  2018        PMID: 29633965      PMCID: PMC5894103          DOI: 10.1107/S2053230X18002868

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  28 in total

Review 1.  Understanding the role of active-site residues in chorismate mutase catalysis from molecular-dynamics simulations.

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Journal:  Angew Chem Int Ed Engl       Date:  2003-04-04       Impact factor: 15.336

2.  Ligation-independent cloning of PCR products (LIC-PCR).

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3.  The 2.15 A crystal structure of Mycobacterium tuberculosis chorismate mutase reveals an unexpected gene duplication and suggests a role in host-pathogen interactions.

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Journal:  Biochemistry       Date:  2006-06-13       Impact factor: 3.162

4.  Biochemical and structural characterization of the secreted chorismate mutase (Rv1885c) from Mycobacterium tuberculosis H37Rv: an *AroQ enzyme not regulated by the aromatic amino acids.

Authors:  Sook-Kyung Kim; Sathyavelu K Reddy; Bryant C Nelson; Gregory B Vasquez; Andrew Davis; Andrew J Howard; Sean Patterson; Gary L Gilliland; Jane E Ladner; Prasad T Reddy
Journal:  J Bacteriol       Date:  2006-12       Impact factor: 3.490

5.  Protein production by auto-induction in high density shaking cultures.

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Review 6.  The Seattle Structural Genomics Center for Infectious Disease (SSGCID).

Authors:  P J Myler; R Stacy; L Stewart; B L Staker; W C Van Voorhis; G Varani; G W Buchko
Journal:  Infect Disord Drug Targets       Date:  2009-11

7.  Gene design, cloning and protein-expression methods for high-value targets at the Seattle Structural Genomics Center for Infectious Disease.

Authors:  Amy Raymond; Taryn Haffner; Nathan Ng; Don Lorimer; Bart Staker; Lance Stewart
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-08-13

8.  Immobilized metal-affinity chromatography protein-recovery screening is predictive of crystallographic structure success.

Authors:  Ryan Choi; Angela Kelley; David Leibly; Stephen Nakazawa Hewitt; Alberto Napuli; Wesley Van Voorhis
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-08-13

9.  Combining functional and structural genomics to sample the essential Burkholderia structome.

Authors:  Loren Baugh; Larry A Gallagher; Rapatbhorn Patrapuvich; Matthew C Clifton; Anna S Gardberg; Thomas E Edwards; Brianna Armour; Darren W Begley; Shellie H Dieterich; David M Dranow; Jan Abendroth; James W Fairman; David Fox; Bart L Staker; Isabelle Phan; Angela Gillespie; Ryan Choi; Steve Nakazawa-Hewitt; Mary Trang Nguyen; Alberto Napuli; Lynn Barrett; Garry W Buchko; Robin Stacy; Peter J Myler; Lance J Stewart; Colin Manoil; Wesley C Van Voorhis
Journal:  PLoS One       Date:  2013-01-31       Impact factor: 3.240

10.  Model preparation in MOLREP and examples of model improvement using X-ray data.

Authors:  Andrey A Lebedev; Alexei A Vagin; Garib N Murshudov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-12-05
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  1 in total

1.  Crystal structure of a short-chain dehydrogenase/reductase from Burkholderia phymatum in complex with NAD.

Authors:  Jawaher Alenazi; Stephen Mayclin; Sandhya Subramanian; Peter J Myler; Oluwatoyin A Asojo
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2022-01-27       Impact factor: 1.072

  1 in total

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