Literature DB >> 29632381

Plain-language medical vocabulary for precision diagnosis.

Nicole A Vasilevsky1,2, Erin D Foster3, Mark E Engelstad4, Leigh Carmody5, Matt Might6, Chip Chambers7, Hugh J S Dawkins8, Janine Lewis9, Maria G Della Rocca9, Michelle Snyder9, Cornelius F Boerkoel10, Ana Rath11, Sharon F Terry12, Alastair Kent13, Beverly Searle14, Gareth Baynam15, Erik Jones16, Pam Gavin17, Michael Bamshad18, Jessica Chong18, Tudor Groza19, David Adams20, Adam C Resnick21, Allison P Heath21, Chris Mungall22, Ingrid A Holm23, Kayli Rageth10, Catherine A Brownstein23, Kent Shefchek1, Julie A McMurry1, Peter N Robinson5, Sebastian Köhler24, Melissa A Haendel25,26,27.   

Abstract

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Year:  2018        PMID: 29632381      PMCID: PMC6258202          DOI: 10.1038/s41588-018-0096-x

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


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  12 in total

1.  Encoding Clinical Data with the Human Phenotype Ontology for Computational Differential Diagnostics.

Authors:  Sebastian Köhler; N Christine Øien; Orion J Buske; Tudor Groza; Julius O B Jacobsen; Craig McNamara; Nicole Vasilevsky; Leigh C Carmody; J P Gourdine; Michael Gargano; Julie A McMurry; Daniel Danis; Christopher J Mungall; Damian Smedley; Melissa Haendel; Peter N Robinson
Journal:  Curr Protoc Hum Genet       Date:  2019-09

2.  Towards more patient friendly clinical notes through language models and ontologies.

Authors:  Francesco Moramarco; Damir Juric; Aleksandar Savkov; Jack Flann; Maria Lehl; Kristian Boda; Tessa Grafen; Vitalii Zhelezniak; Sunir Gohil; Alex Papadopoulos Korfiatis; Nils Hammerla
Journal:  AMIA Annu Symp Proc       Date:  2022-02-21

Review 3.  [From symptom to syndrome using modern software support].

Authors:  S Köhler
Journal:  Internist (Berl)       Date:  2018-08       Impact factor: 0.743

Review 4.  The case for open science: rare diseases.

Authors:  Yaffa R Rubinstein; Peter N Robinson; William A Gahl; Paul Avillach; Gareth Baynam; Helene Cederroth; Rebecca M Goodwin; Stephen C Groft; Mats G Hansson; Nomi L Harris; Vojtech Huser; Deborah Mascalzoni; Julie A McMurry; Matthew Might; Christoffer Nellaker; Barend Mons; Dina N Paltoo; Jonathan Pevsner; Manuel Posada; Alison P Rockett-Frase; Marco Roos; Tamar B Rubinstein; Domenica Taruscio; Esther van Enckevort; Melissa A Haendel
Journal:  JAMIA Open       Date:  2020-09-11

5.  Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources.

Authors:  Sebastian Köhler; Leigh Carmody; Nicole Vasilevsky; Julius O B Jacobsen; Daniel Danis; Jean-Philippe Gourdine; Michael Gargano; Nomi L Harris; Nicolas Matentzoglu; Julie A McMurry; David Osumi-Sutherland; Valentina Cipriani; James P Balhoff; Tom Conlin; Hannah Blau; Gareth Baynam; Richard Palmer; Dylan Gratian; Hugh Dawkins; Michael Segal; Anna C Jansen; Ahmed Muaz; Willie H Chang; Jenna Bergerson; Stanley J F Laulederkind; Zafer Yüksel; Sergi Beltran; Alexandra F Freeman; Panagiotis I Sergouniotis; Daniel Durkin; Andrea L Storm; Marc Hanauer; Michael Brudno; Susan M Bello; Murat Sincan; Kayli Rageth; Matthew T Wheeler; Renske Oegema; Halima Lourghi; Maria G Della Rocca; Rachel Thompson; Francisco Castellanos; James Priest; Charlotte Cunningham-Rundles; Ayushi Hegde; Ruth C Lovering; Catherine Hajek; Annie Olry; Luigi Notarangelo; Morgan Similuk; Xingmin A Zhang; David Gómez-Andrés; Hanns Lochmüller; Hélène Dollfus; Sergio Rosenzweig; Shruti Marwaha; Ana Rath; Kathleen Sullivan; Cynthia Smith; Joshua D Milner; Dorothée Leroux; Cornelius F Boerkoel; Amy Klion; Melody C Carter; Tudor Groza; Damian Smedley; Melissa A Haendel; Chris Mungall; Peter N Robinson
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

6.  Opportunities and Challenges in Interpreting and Sharing Personal Genomes.

Authors:  Irit R Rubin; Gustavo Glusman
Journal:  Genes (Basel)       Date:  2019-08-25       Impact factor: 4.096

7.  The Sickle Cell Disease Ontology: enabling universal sickle cell-based knowledge representation.

Authors: 
Journal:  Database (Oxford)       Date:  2019-01-01       Impact factor: 3.451

8.  The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species.

Authors:  Kent A Shefchek; Nomi L Harris; Michael Gargano; Nicolas Matentzoglu; Deepak Unni; Matthew Brush; Daniel Keith; Tom Conlin; Nicole Vasilevsky; Xingmin Aaron Zhang; James P Balhoff; Larry Babb; Susan M Bello; Hannah Blau; Yvonne Bradford; Seth Carbon; Leigh Carmody; Lauren E Chan; Valentina Cipriani; Alayne Cuzick; Maria Della Rocca; Nathan Dunn; Shahim Essaid; Petra Fey; Chris Grove; Jean-Phillipe Gourdine; Ada Hamosh; Midori Harris; Ingo Helbig; Maureen Hoatlin; Marcin Joachimiak; Simon Jupp; Kenneth B Lett; Suzanna E Lewis; Craig McNamara; Zoë M Pendlington; Clare Pilgrim; Tim Putman; Vida Ravanmehr; Justin Reese; Erin Riggs; Sofia Robb; Paola Roncaglia; James Seager; Erik Segerdell; Morgan Similuk; Andrea L Storm; Courtney Thaxon; Anne Thessen; Julius O B Jacobsen; Julie A McMurry; Tudor Groza; Sebastian Köhler; Damian Smedley; Peter N Robinson; Christopher J Mungall; Melissa A Haendel; Monica C Munoz-Torres; David Osumi-Sutherland
Journal:  Nucleic Acids Res       Date:  2020-01-08       Impact factor: 16.971

9.  Correcting "insertion-deletion mutations" in medical terminology.

Authors:  Alexios-Fotios A Mentis; Athanasios G Papavassiliou
Journal:  J Cell Mol Med       Date:  2018-09-06       Impact factor: 5.310

Review 10.  Meeting Patients' Right to the Correct Diagnosis: Ongoing International Initiatives on Undiagnosed Rare Diseases and Ethical and Social Issues.

Authors:  Sabina Gainotti; Deborah Mascalzoni; Virginie Bros-Facer; Carlo Petrini; Giovanna Floridia; Marco Roos; Marco Salvatore; Domenica Taruscio
Journal:  Int J Environ Res Public Health       Date:  2018-09-21       Impact factor: 3.390

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