| Literature DB >> 29632138 |
Emma L Bailey1, Martin W McBride2, John D McClure2, Wendy Beattie2, Delyth Graham2, Anna F Dominiczak2, Colin Smith3, Joanna M Wardlaw4.
Abstract
BACKGROUND: The effect of salt on cerebral small vessel disease (SVD) is poorly understood. We assessed the effect of dietary salt on cerebral tissue of the stroke-prone spontaneously hypertensive rat (SHRSP) - a relevant model of sporadic SVD - at both the gene and protein level.Entities:
Keywords: SHRSP; Salt; Small Vessel; White Matter; stroke
Mesh:
Substances:
Year: 2018 PMID: 29632138 PMCID: PMC6365623 DOI: 10.1042/CS20171572
Source DB: PubMed Journal: Clin Sci (Lond) ISSN: 0143-5221 Impact factor: 6.124
Figure 1Four way Venn diagram from rank products analysis representing genes that were significantly differentially expressed in comparisons of salt (S) versus no salt animals, within (A) SHRSP (SP) frontal (F) brain sections; (B) WKY frontal brain sections; (C) SHRSP mid-coronal (M) brain sections; (D) WKY mid-coronal brain sections.
The total number of significantly differentially expressed genes is given in brackets outside the relevant Venn rectangle (112 for A, 59 for B, 9 for C and 78 for D). Within the rectangles every possible combination of these sets of significant genes is given. For example, (A___) shows there were 83 genes that were only significant for the A comparison; (AB__) shows there were seven genes that were significant for both the A and B comparisons but not for C and D; (ABC_) shows there were 0 genes that were significant for the A, B and C comparisons but not for D; (ABCD) shows there was one gene significant for all four of the comparisons.
Figure 2An IPA software network representing interactions between differentially expressed genes within frontal brain sections.
Green, down-regulated genes and red, up-regulated genes. Statistics quoted are, from top to bottom – p value, fold change and signal intensity. Solid lines indicate direct interactions. Dotted lines indicate indirect interactions. (left) Salt-loaded versus non-salt loaded WKY. (right) The same network overlaid with salt-loaded versus non-salt loaded SHRSP data therefore genes highlighted in red indicate genes up-regulated in salt-loaded SHRSP compared with SHRSP. For full numerical data corresponding to this figure, see Supplementary Information.
Figure 3An IPA software network representing interactions between differentially expressed genes within the frontal sections of salt-loaded SHRSP versus non-salt loaded SHRSP.
All genes highlighted in green are down-regulated in salt-loaded SHRSP. Genes highlighted in red are up-regulated in salt-loaded SHRSP. Statistics quoted are from top to bottom – p value, fold change and signal intensity. Solid lines indicate direct interactions. Dotted lines indicate indirect interactions. For full numerical data corresponding to this figure, see Supplementary Information.
The top ten up- and down-regulated genes within and between strain and salt comparisons
| Frontal section | Mid-coronal section | |||||||
|---|---|---|---|---|---|---|---|---|
| Salt | Up-regulated | Fold change | Down-regulated | Fold change | Up-regulated | Fold change | Down-regulated | Fold change |
| Salt-loaded WKY versus non-salt loaded WKY | LOC100129193 | ×16.3 | MBP | ×2.6 | LOC100129193 | ×4.2 | PRKCD | ×2.5 |
| Salt-loaded versus non-salt loaded SHRSP | TTR | ×53.4 | VOPP1 | ×2.7 | LOC100129193 | ×3.3 | TTR | ×3.1 |
| Salt-loaded SHRSP versus salt-loaded WKY | RGD1564649 | ×46.1 | MRPL18 | ×39.4 | RGD1564649 | ×43.9 | MRPL18 | ×41.7 |
Results are for each brain section. N = 4 for all groups. All genes listed are significantly expressed when an FDR of q<0.05 is applied.
Abbreviations: ACTB, β-actin; ADORA2A, adenosine A2a receptor; AHSG, α-2-HS-glycoprotein; ALDOB, aldolase B, fructose-bisphosphate; AMBP, α-1-microglobulin/bikunin precursor; ANXA1, annexin A1; APOH, Apolipoprotein H; AQP1, aquaporin 1; SCN4B, sodium channel, voltage-gated, type IV, β; AVP, arginine vasopressin; CABP7, calcium binding protein 7; CPE, carboxypeptidase E; CSNK2A1, casein kinase 2, α 1 polypeptide; CYR61, cysteine-rich, angiogenic inducer, 61; DLX5, distal-less homeobox 5; F5, coagulation factor V; FAM151B, family with sequence similarity 151, member B; GC, group specific component; GDI1, GDP dissociation inhibitor 1; GPM6A, glycoprotein m6a; GPR18, G protein-coupled receptor 18; GPR88, G protein-coupled receptor 88; GSK3B, glycogen synthase kinase 3 β; GUCY1a3, guanylate cyclase α subunit 3; HBB, hemoglobin, β; HBXIP, hepatitis B virus x interacting protein; HLA-C, major histocompatibility complex, class C; IL11, interleukin 11; LOC100129193, major urinary protein pseudogene; LRRC7, leucine rich repeat containing 7; MAP1B, microtubule-associated protein 1B; MCTP1, multiple C2 domains, transmembrane 1; MRPL18, mitochondrial ribosomal protein L18; MYEF2, myelin expression factor 2; NSF, N-ethylmaleimide-sensitive factor; NTS, neurotensin; OPCML, opioid binding protein/cell adhesion molecule-like; OTX2, orthodenticle homeobox 2; OXT, oxytocin; PKM2, pyruvate kinase, muscle; PMCH, pro-melanin-concentrating hormone; PPP3CB, protein phosphatase 3, catalytic subunit, β isoform; PRKCG, protein kinase C, γ; PXPM4, peroxisomal membrane protein 4; RASD2, RASD family, member 2; RGD, Rat genome database; ROCK2, Rho-associated coiled-coil containing protein kinase 2; RSP9, ribosomal protein 9; SEC61G, SEC61, γ subunit; SEPT7, septin 7; SETD3, SET domain containing 3; SIPA1L2, signal-induced proliferation-associated 1 like 2; SLC17A6, solute carrier family 17 member 6; SLC24A2, solute carrier family 24 member 2; SLC32A1, solute carrier family 32 member 1; SLCO1A5, solute carrier organic anion transporter family, member 1a5; SNURF, SNRPN upstream reading frame; SOSTDC1, sclerostin domain containing 1; TAC1, tachykinin 1; TCEB1, transcription elongation factor B (SIII), polypeptide 1; TMEM27, transmembrane protein 27; TPI1, triosephosphate isomerase 1; TSPAN7, tetraspanin 7; TTR, transthyretin; VGF, vascular growth factor; VOPP1, vesicular, overexpressed in cancer, prosurvival protein 1; VPS13C, vacuolar protein sorting 13 -homologue; ZNF597, Zinc finger protein 597.
Figure 5Immunoreactivity of GFAP in frontal and mid-coronal sections non-salt loaded versus salt-loaded SHRSP and WKY.
Each bar represents N=5. Error bars represent standard error of the mean. Staining panel (A) non-salt loaded WKY, (B) salt-loaded WKY, (C) non-salt loaded SHRSP and (D) salt-loaded SHRSP. All images taken at ×10 objective in the deep grey matter of a frontal section. *P<0.05
Figure 6Immunoreactivity of MBP in frontal and mid-coronal sections of non-salt loaded versus salt-loaded SHRSP and WKY.
Each bar represents N=5. Error bars represent standard error of the mean. Staining panel (A) non-salt loaded WKY, (B) salt-loaded WKY, (C) non-salt loaded SHRSP and (D) salt-loaded SHRSP. All images taken at ×4 objective in the cortical grey matter of a frontal section. *P<0.05.
Figure 7A diagrammatical summary of both genetic and protein changes affecting the neurovascular unit observed in the cerebral tissue of salt-loaded WKY and SHRSP rats.
Results of ANOVA analysis on the effect of salt on the percentage staining of 4 antibodies assessing vascular structure
Results of ANOVA analysis on the effect of salt on the percentage staining of 4 antibodies assessing vascular structure
Results of ANOVA analysis on the effect of salt on the percentage staining of 4 antibodies assessing the presence / absence of vascular disease
Results of ANOVA analysis on the effect of salt on the percentage staining of 4 antibodies assessing the presence / absence of vascular disease