Literature DB >> 29630922

Delivery of femtolitre droplets using surface acoustic wave based atomisation for cryo-EM grid preparation.

Dariush Ashtiani1, Hari Venugopal2, Matthew Belousoff3, Bradley Spicer4, Johnson Mak5, Adrian Neild6, Alex de Marco7.   

Abstract

Cryo-Electron Microscopy (cryo-EM) has become an invaluable tool for structural biology. Over the past decade, the advent of direct electron detectors and automated data acquisition has established cryo-EM as a central method in structural biology. However, challenges remain in the reliable and efficient preparation of samples in a manner which is compatible with high time resolution. The delivery of sample onto the grid is recognized as a critical step in the workflow as it is a source of variability and loss of material due to the blotting which is usually required. Here, we present a method for sample delivery and plunge freezing based on the use of Surface Acoustic Waves to deploy 6-8 µm droplets to the EM grid. This method minimises the sample dead volume and ensures vitrification within 52.6 ms from the moment the sample leaves the microfluidics chip. We demonstrate a working protocol to minimize the atomised volume and apply it to plunge freeze three different samples and provide proof that no damage occurs due to the interaction between the sample and the acoustic waves.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Atomization; Blot-free sample preparation; Cryo-EM; Microfluidics; Surface acoustic waves

Mesh:

Year:  2018        PMID: 29630922     DOI: 10.1016/j.jsb.2018.03.012

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  13 in total

1.  Applications of Acoustofluidics in Bioanalytical Chemistry.

Authors:  Peng Li; Tony Jun Huang
Journal:  Anal Chem       Date:  2018-12-18       Impact factor: 6.986

2.  Electrophoretic exclusion microscale sample preparation for cryo-EM structural determination of proteins.

Authors:  Fanyi Zhu; Brent L Nannenga; Mark A Hayes
Journal:  Biomicrofluidics       Date:  2019-10-28       Impact factor: 2.800

Review 3.  Understanding the invisible hands of sample preparation for cryo-EM.

Authors:  Giulia Weissenberger; Rene J M Henderikx; Peter J Peters
Journal:  Nat Methods       Date:  2021-05-07       Impact factor: 47.990

4.  Cryo-EM structures from sub-nl volumes using pin-printing and jet vitrification.

Authors:  Raimond B G Ravelli; Frank J T Nijpels; Rene J M Henderikx; Giulia Weissenberger; Sanne Thewessem; Abril Gijsbers; Bart W A M M Beulen; Carmen López-Iglesias; Peter J Peters
Journal:  Nat Commun       Date:  2020-05-22       Impact factor: 14.919

Review 5.  Cryo-EM Grid Preparation of Membrane Protein Samples for Single Particle Analysis.

Authors:  Germán G Sgro; Tiago R D Costa
Journal:  Front Mol Biosci       Date:  2018-07-31

6.  Sample deposition onto cryo-EM grids: from sprays to jets and back.

Authors:  David P Klebl; Diana C F Monteiro; Dimitrios Kontziampasis; Florian Kopf; Frank Sobott; Howard D White; Martin Trebbin; Stephen P Muench
Journal:  Acta Crystallogr D Struct Biol       Date:  2020-03-25       Impact factor: 7.652

Review 7.  Using cryo-EM to uncover mechanisms of bacterial transcriptional regulation.

Authors:  David M Wood; Renwick C J Dobson; Christopher R Horne
Journal:  Biochem Soc Trans       Date:  2021-12-17       Impact factor: 5.407

8.  Reducing effects of particle adsorption to the air-water interface in cryo-EM.

Authors:  Alex J Noble; Hui Wei; Venkata P Dandey; Zhening Zhang; Yong Zi Tan; Clinton S Potter; Bridget Carragher
Journal:  Nat Methods       Date:  2018-09-24       Impact factor: 28.547

9.  Methods for merging data sets in electron cryo-microscopy.

Authors:  Max E Wilkinson; Ananthanarayanan Kumar; Ana Casañal
Journal:  Acta Crystallogr D Struct Biol       Date:  2019-08-23       Impact factor: 7.652

10.  Shake-it-off: a simple ultrasonic cryo-EM specimen-preparation device.

Authors:  John L Rubinstein; Hui Guo; Zev A Ripstein; Ali Haydaroglu; Aaron Au; Christopher M Yip; Justin M Di Trani; Samir Benlekbir; Timothy Kwok
Journal:  Acta Crystallogr D Struct Biol       Date:  2019-11-22       Impact factor: 7.652

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