Literature DB >> 29627359

3D structure determination of amyloid fibrils using solid-state NMR spectroscopy.

Antoine Loquet1, Nadia El Mammeri1, Jan Stanek2, Mélanie Berbon1, Benjamin Bardiaux3, Guido Pintacuda2, Birgit Habenstein4.   

Abstract

The amyloid fold is structurally characterized by a typical cross-β architecture, which is under debate to represent an energy-favourable folding state that many globular or natively unfolded proteins can adopt. Being initially solely associated with amyloid fibrils observed in the propagation of several neurodegenerative disorders, the discovery of non-pathological (or "functional") amyloids in many native biological processes has recently further intensified the general interest invested in those cross-β supramolecular assemblies. The insoluble and non-crystalline nature of amyloid fibrils and their usually inhomogeneous appearance on the mesoscopic level pose a challenge to biophysical techniques aiming at an atomic-level structural characterization. Solid-state NMR spectroscopy (SSNMR) has granted breakthroughs in structural investigations on amyloid fibrils ranging from the assessment of the impact of polymorphism in disease development to the 3D atomic structure determination of amyloid fibrils. First landmark studies towards the characterization of atomic structures and interactions involving functional amyloids have provided new impulses in the understanding of the role of the amyloid fold in native biological functions. Over the last decade many strategies have been developed in protein isotope labelling, NMR resonance assignment, distance restraint determination and 3D structure calculation of amyloid fibrils based on SSNMR approaches. We will here discuss the emerging concepts and state-of-the-art methods related to the assessment of amyloid structures and interactions involving amyloid entities by SSNMR.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Amyloid fibrils; Isotopic labelling; Prions; Protein aggregation; Proton detection; Solid-state NMR; Structural biology; Structure calculation

Mesh:

Substances:

Year:  2018        PMID: 29627359     DOI: 10.1016/j.ymeth.2018.03.014

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  15 in total

1.  Mechanistic Insights into Microsecond Time-Scale Motion of Solid Proteins Using Complementary 15N and 1H Relaxation Dispersion Techniques.

Authors:  Petra Rovó; Colin A Smith; Diego Gauto; Bert L de Groot; Paul Schanda; Rasmus Linser
Journal:  J Am Chem Soc       Date:  2019-01-08       Impact factor: 15.419

Review 2.  High-resolution probing of early events in amyloid-β aggregation related to Alzheimer's disease.

Authors:  Bikash R Sahoo; Sarah J Cox; Ayyalusamy Ramamoorthy
Journal:  Chem Commun (Camb)       Date:  2020-04-17       Impact factor: 6.222

3.  Two decades of progress in structural and dynamic studies of amyloids by solid-state NMR.

Authors:  Christopher P Jaroniec
Journal:  J Magn Reson       Date:  2019-07-09       Impact factor: 2.229

4.  In vivo liquid-liquid phase separation protects amyloidogenic and aggregation-prone peptides during overexpression in Escherichia coli.

Authors:  Bartosz Gabryelczyk; Reema Alag; Margaret Philips; Kimberly Low; Anandalakshmi Venkatraman; Bhuvaneswari Kannaian; Xiangyan Shi; Markus Linder; Konstantin Pervushin; Ali Miserez
Journal:  Protein Sci       Date:  2022-05       Impact factor: 6.725

Review 5.  1H-Detected Biomolecular NMR under Fast Magic-Angle Spinning.

Authors:  Tanguy Le Marchand; Tobias Schubeis; Marta Bonaccorsi; Piotr Paluch; Daniela Lalli; Andrew J Pell; Loren B Andreas; Kristaps Jaudzems; Jan Stanek; Guido Pintacuda
Journal:  Chem Rev       Date:  2022-05-10       Impact factor: 72.087

6.  Proton-detected polarization optimized experiments (POE) using ultrafast magic angle spinning solid-state NMR: Multi-acquisition of membrane protein spectra.

Authors:  T Gopinath; Gianluigi Veglia
Journal:  J Magn Reson       Date:  2019-11-28       Impact factor: 2.229

7.  Multi-receiver solid-state NMR using polarization optimized experiments (POE) at ultrafast magic angle spinning.

Authors:  T Gopinath; Daniel K Weber; Gianluigi Veglia
Journal:  J Biomol NMR       Date:  2020-04-24       Impact factor: 2.835

8.  Fast Magic-Angle Spinning 19 F NMR Spectroscopy of HIV-1 Capsid Protein Assemblies.

Authors:  Mingzhang Wang; Manman Lu; Matthew P Fritz; Caitlin M Quinn; In-Ja L Byeon; Chang-Hyeock Byeon; Jochem Struppe; Werner Maas; Angela M Gronenborn; Tatyana Polenova
Journal:  Angew Chem Int Ed Engl       Date:  2018-10-19       Impact factor: 15.336

9.  Structure of a Protein-RNA Complex by Solid-State NMR Spectroscopy.

Authors:  Mumdooh Ahmed; Alexander Marchanka; Teresa Carlomagno
Journal:  Angew Chem Int Ed Engl       Date:  2020-02-28       Impact factor: 15.336

Review 10.  Structures of Pathological and Functional Amyloids and Prions, a Solid-State NMR Perspective.

Authors:  Asen Daskalov; Nadia El Mammeri; Alons Lends; Jayakrishna Shenoy; Gaelle Lamon; Yann Fichou; Ahmad Saad; Denis Martinez; Estelle Morvan; Melanie Berbon; Axelle Grélard; Brice Kauffmann; Mathias Ferber; Benjamin Bardiaux; Birgit Habenstein; Sven J Saupe; Antoine Loquet
Journal:  Front Mol Neurosci       Date:  2021-07-01       Impact factor: 5.639

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.