Literature DB >> 29626805

Evaluation of the precision ID whole MtDNA genome panel for forensic analyses.

Christina Strobl1, Mayra Eduardoff1, Magdalena M Bus2, Marie Allen2, Walther Parson3.   

Abstract

Mitochondrial DNA (mtDNA) amplification and Massively Parallel Sequencing (MPS) using an early access version of the Precision ID Whole MtDNA Genome Panel (Thermo Fisher Scientific) and the Ion Personal Genome Machine (PGM) were evaluated using 15 forensically relevant samples. Samples were selected to represent typical forensic specimens for mtDNA analysis including hairs, hair shafts, swabs and ancient solid tissue samples (bones and teeth) that were stored in the freezer for up to several years after having been typed with conventional Sanger-type Sequencing and Capillary Electrophoresis. The MPS haplotypes confirmed the earlier results in all samples and provided additional sequence information that improved discrimination power and haplogroup estimation. The results raised the appetite for further experiments to validate and apply the new technology in forensic practice.
Copyright © 2018 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Degraded DNA; Forensic genetics; Massively parallel sequencing; Mini-amplicon; Mitochondrial DNA; Mitogenome; Next generation sequencing; Primer tiling

Mesh:

Substances:

Year:  2018        PMID: 29626805     DOI: 10.1016/j.fsigen.2018.03.013

Source DB:  PubMed          Journal:  Forensic Sci Int Genet        ISSN: 1872-4973            Impact factor:   4.882


  18 in total

1.  Developmental validation of the MGIEasy Signature Identification Library Prep Kit, an all-in-one multiplex system for forensic applications.

Authors:  Ran Li; Xuefeng Shen; Hui Chen; Dan Peng; Riga Wu; Hongyu Sun
Journal:  Int J Legal Med       Date:  2021-02-01       Impact factor: 2.686

2.  Helena's Many Daughters: More Mitogenome Diversity behind the Most Common West Eurasian mtDNA Control Region Haplotype in an Extended Italian Population Sample.

Authors:  Martin Bodner; Christina Amory; Anna Olivieri; Francesca Gandini; Irene Cardinali; Hovirag Lancioni; Gabriela Huber; Catarina Xavier; Maria Pala; Alessandro Fichera; Lisa Schnaller; Mario Gysi; Stefania Sarno; Davide Pettener; Donata Luiselli; Martin B Richards; Ornella Semino; Alessandro Achilli; Antonio Torroni; Walther Parson
Journal:  Int J Mol Sci       Date:  2022-06-16       Impact factor: 6.208

3.  Massively parallel sequencing of human skeletal remains in Vietnam using the precision ID mtDNA control region panel on the Ion S5™ system.

Authors:  May Thi Anh Ta; Nam Ngoc Nguyen; Duc Minh Tran; Trang Hong Nguyen; Tuan Anh Vu; Dung Thi Le; Phuong Thi Le; Thu Thi Hong Do; Ha Hoang; Hoang Ha Chu
Journal:  Int J Legal Med       Date:  2021-07-01       Impact factor: 2.686

4.  The mitogenome portrait of Umbria in Central Italy as depicted by contemporary inhabitants and pre-Roman remains.

Authors:  Alessandra Modi; Hovirag Lancioni; Irene Cardinali; Marco R Capodiferro; Nicola Rambaldi Migliore; Abir Hussein; Christina Strobl; Martin Bodner; Lisa Schnaller; Catarina Xavier; Ermanno Rizzi; Laura Bonomi Ponzi; Stefania Vai; Alessandro Raveane; Bruno Cavadas; Ornella Semino; Antonio Torroni; Anna Olivieri; Martina Lari; Luisa Pereira; Walther Parson; David Caramelli; Alessandro Achilli
Journal:  Sci Rep       Date:  2020-07-01       Impact factor: 4.379

5.  Recovery of whole mitochondrial genome from compromised samples via multiplex PCR and massively parallel sequencing.

Authors:  Maureen P Hickman; Kelly S Grisedale; Brittania J Bintz; Erin S Burnside; Erin K Hanson; Jack Ballantyne; Mark R Wilson
Journal:  Future Sci OA       Date:  2018-08-24

6.  Mitochondrial DNA in human identification: a review.

Authors:  António Amorim; Teresa Fernandes; Nuno Taveira
Journal:  PeerJ       Date:  2019-08-13       Impact factor: 2.984

7.  How many individuals share a mitochondrial genome?

Authors:  Mikkel M Andersen; David J Balding
Journal:  PLoS Genet       Date:  2018-11-01       Impact factor: 5.917

8.  Mitigating the effects of reference sequence bias in single-multiplex massively parallel sequencing of the mitochondrial DNA control region.

Authors:  Tunde I Huszar; Jon H Wetton; Mark A Jobling
Journal:  Forensic Sci Int Genet       Date:  2019-01-16       Impact factor: 4.882

9.  Inter-laboratory study on standardized MPS libraries: evaluation of performance, concordance, and sensitivity using mixtures and degraded DNA.

Authors:  Petra Müller; Christian Sell; Thorsten Hadrys; Johannes Hedman; Steffi Bredemeyer; Francois-Xavier Laurent; Lutz Roewer; Sabrina Achtruth; Maja Sidstedt; Titia Sijen; Marc Trimborn; Natalie Weiler; Sascha Willuweit; Ingo Bastisch; Walther Parson
Journal:  Int J Legal Med       Date:  2019-11-19       Impact factor: 2.686

10.  Pathogenic Variant Filtering for Mitochondrial Genome Haplotype Reporting.

Authors:  Charla Marshall; Kimberly Sturk-Andreaggi; Joseph D Ring; Arne Dür; Walther Parson
Journal:  Genes (Basel)       Date:  2020-09-28       Impact factor: 4.096

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