Literature DB >> 29626546

Aptamer chemistry.

Pascal Röthlisberger1, Marcel Hollenstein2.   

Abstract

Aptamers are single-stranded DNA or RNA molecules capable of tightly binding to specific targets. These functional nucleic acids are obtained by an in vitro Darwinian evolution method coined SELEX (Systematic Evolution of Ligands by EXponential enrichment). Compared to their proteinaceous counterparts, aptamers offer a number of advantages including a low immunogenicity, a relative ease of large-scale synthesis at affordable costs with little or no batch-to-batch variation, physical stability, and facile chemical modification. These alluring properties have propelled aptamers into the forefront of numerous practical applications such as the development of therapeutic and diagnostic agents as well as the construction of biosensing platforms. However, commercial success of aptamers still proceeds at a weak pace. The main factors responsible for this delay are the susceptibility of aptamers to degradation by nucleases, their rapid renal filtration, suboptimal thermal stability, and the lack of functional group diversity. Here, we describe the different chemical methods available to mitigate these shortcomings. Particularly, we describe the chemical post-SELEX processing of aptamers to include functional groups as well as the inclusion of modified nucleoside triphosphates into the SELEX protocol. These methods will be illustrated with successful examples of chemically modified aptamers used as drug delivery systems, in therapeutic applications, and as biosensing devices.
Copyright © 2018 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Aptamers; Biosensor; Chemically modified nucleic acids; Drug delivery; Nucleoside triphosphates; SELEX; Targeted therapeutics

Mesh:

Substances:

Year:  2018        PMID: 29626546     DOI: 10.1016/j.addr.2018.04.007

Source DB:  PubMed          Journal:  Adv Drug Deliv Rev        ISSN: 0169-409X            Impact factor:   15.470


  43 in total

Review 1.  Beyond DNA and RNA: The Expanding Toolbox of Synthetic Genetics.

Authors:  Alexander I Taylor; Gillian Houlihan; Philipp Holliger
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-06-03       Impact factor: 10.005

2.  Evolution of abiotic cubane chemistries in a nucleic acid aptamer allows selective recognition of a malaria biomarker.

Authors:  Yee-Wai Cheung; Pascal Röthlisberger; Ariel E Mechaly; Patrick Weber; Fabienne Levi-Acobas; Young Lo; Alvin W C Wong; Andrew B Kinghorn; Ahmed Haouz; G Paul Savage; Marcel Hollenstein; Julian A Tanner
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-06       Impact factor: 11.205

3.  Enzymatic synthesis and modification of high molecular weight DNA using terminal deoxynucleotidyl transferase.

Authors:  Sonal Deshpande; Yunqi Yang; Ashutosh Chilkoti; Stefan Zauscher
Journal:  Methods Enzymol       Date:  2019-08-30       Impact factor: 1.600

4.  Programmable manipulation of oligonucleotide-albumin interaction for elongated circulation time.

Authors:  Cai Yang; Haitao Zhao; Yang Sun; Cheng Wang; Xinyao Geng; Ruowen Wang; Lumin Tang; Da Han; Jianjun Liu; Weihong Tan
Journal:  Nucleic Acids Res       Date:  2022-04-08       Impact factor: 16.971

5.  Solution structure of a thrombin binding aptamer complex with a non-planar platinum(ii) compound.

Authors:  Bo-Chen Zhu; Juan He; Xiao-Yu Xia; Jingxing Jiang; Wenting Liu; Liu-Yi Liu; Bing-Bing Liang; Hua-Gang Yao; Zhuofeng Ke; Wei Xia; Zong-Wan Mao
Journal:  Chem Sci       Date:  2022-06-23       Impact factor: 9.969

6.  Development of Novel Aptamer-Based Targeted Chemotherapy for Bladder Cancer.

Authors:  Yao Wang; Yang Zhang; Peng-Chao Li; Jiajie Guo; Fan Huo; Jintao Yang; Ru Jia; Juan Wang; Qiju Huang; Dan Theodorescu; Hanyang Yu; Chao Yan
Journal:  Cancer Res       Date:  2022-03-15       Impact factor: 13.312

Review 7.  Potential applications of aptamers in veterinary science.

Authors:  Solène Niederlender; Jean-Jacques Fontaine; Grégory Karadjian
Journal:  Vet Res       Date:  2021-06-02       Impact factor: 3.683

Review 8.  Advances in Screening and Development of Therapeutic Aptamers Against Cancer Cells.

Authors:  Zheng Li; Xuekun Fu; Jie Huang; Peiyuan Zeng; Yuhong Huang; Xinxin Chen; Chao Liang
Journal:  Front Cell Dev Biol       Date:  2021-05-19

9.  Circular L-RNA aptamer promotes target recognition and controls gene activity.

Authors:  Danyang Ji; Kaixin Lyu; Haizhou Zhao; Chun Kit Kwok
Journal:  Nucleic Acids Res       Date:  2021-07-21       Impact factor: 16.971

10.  Energy Landscapes of Deoxyxylo- and Xylo-Nucleic Acid Octamers.

Authors:  Daniel J Sharpe; Konstantin Röder; David J Wales
Journal:  J Phys Chem B       Date:  2020-05-06       Impact factor: 2.991

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