Literature DB >> 29623659

Directed-Backbone Dissociation Following Bond-Specific Carbon-Sulfur UVPD at 213 nm.

Lance E Talbert1, Ryan R Julian2.   

Abstract

Ultraviolet photodissociation or UVPD is an increasingly popular option for tandem-mass spectrometry experiments. UVPD can be carried out at many wavelengths, and it is important to understand how the results will be impacted by this choice. Here, we explore the utility of 213 nm photons for initiating bond-selective fragmentation. It is found that bonds previously determined to be labile at 266 nm, including carbon-iodine and sulfur-sulfur bonds, can also be cleaved with high selectivity at 213 nm. In addition, many carbon-sulfur bonds that are not subject to direct dissociation at 266 nm can be selectively fragmented at 213 nm. This capability can be used to site-specifically create alaninyl radicals that direct backbone dissociation at the radical site, creating diagnostic d-ions. Furthermore, the additional carbon-sulfur bond fragmentation capability leads to signature triplets for fragmentation of disulfide bonds. Absorption of amide bonds can enhance dissociation of nearby labile carbon-sulfur bonds and can be used for stochastic backbone fragmentation typical of UVPD experiments at shorter wavelengths. Several potential applications of the bond-selective fragmentation chemistry observed at 213 nm are discussed. Graphical Abstract ᅟ.

Entities:  

Keywords:  Disulfide; Excited state; Iodine; Laser; Phosphorylation; Photodissociation

Year:  2018        PMID: 29623659      PMCID: PMC6087500          DOI: 10.1007/s13361-018-1934-x

Source DB:  PubMed          Journal:  J Am Soc Mass Spectrom        ISSN: 1044-0305            Impact factor:   3.109


  25 in total

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2.  Side chain chemistry mediates backbone fragmentation in hydrogen deficient peptide radicals.

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3.  Characterizing gaseous peptide structure with action-EET and simulated annealing.

Authors:  Nathan G Hendricks; Ryan R Julian
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4.  UV photodissociation of proline-containing peptide ions: insights from molecular dynamics.

Authors:  Marion Girod; Zeljka Sanader; Marin Vojkovic; Rodolphe Antoine; Luke MacAleese; Jérôme Lemoine; Vlasta Bonacic-Koutecky; Philippe Dugourd
Journal:  J Am Soc Mass Spectrom       Date:  2014-12-11       Impact factor: 3.109

Review 5.  Peptide radicals and cation radicals in the gas phase.

Authors:  František Tureček; Ryan R Julian
Journal:  Chem Rev       Date:  2013-05-07       Impact factor: 60.622

6.  193 nm Ultraviolet Photodissociation Mass Spectrometry of Tetrameric Protein Complexes Provides Insight into Quaternary and Secondary Protein Topology.

Authors:  Lindsay J Morrison; Jennifer S Brodbelt
Journal:  J Am Chem Soc       Date:  2016-08-17       Impact factor: 15.419

Review 7.  Photodissociation mass spectrometry: new tools for characterization of biological molecules.

Authors:  Jennifer S Brodbelt
Journal:  Chem Soc Rev       Date:  2014-01-30       Impact factor: 54.564

8.  Direct elucidation of disulfide bond partners using ultraviolet photodissociation mass spectrometry.

Authors:  Arun Agarwal; Jolene K Diedrich; Ryan R Julian
Journal:  Anal Chem       Date:  2011-08-02       Impact factor: 6.986

9.  Derivatization of phosphorylated peptides with S- and N-nucleophiles for enhanced ionization efficiency in matrix-assisted laser desorption/ionization mass spectrometry.

Authors:  Clementine Klemm; Stephan Schröder; Matthias Glückmann; Michael Beyermann; Eberhard Krause
Journal:  Rapid Commun Mass Spectrom       Date:  2004       Impact factor: 2.419

10.  MS/MS simplification by 355 nm ultraviolet photodissociation of chromophore-derivatized peptides in a quadrupole ion trap.

Authors:  Jeffrey J Wilson; Jennifer S Brodbelt
Journal:  Anal Chem       Date:  2007-09-11       Impact factor: 6.986

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  6 in total

1.  Simplified identification of disulfide, trisulfide, and thioether pairs with 213 nm UVPD.

Authors:  James Bonner; Lance E Talbert; Nicholas Akkawi; Ryan R Julian
Journal:  Analyst       Date:  2018-10-22       Impact factor: 4.616

2.  Thorough Performance Evaluation of 213 nm Ultraviolet Photodissociation for Top-down Proteomics.

Authors:  Luca Fornelli; Kristina Srzentić; Timothy K Toby; Peter F Doubleday; Romain Huguet; Christopher Mullen; Rafael D Melani; Henrique Dos Santos Seckler; Caroline J DeHart; Chad R Weisbrod; Kenneth R Durbin; Joseph B Greer; Bryan P Early; Ryan T Fellers; Vlad Zabrouskov; Paul M Thomas; Philip D Compton; Neil L Kelleher
Journal:  Mol Cell Proteomics       Date:  2019-12-30       Impact factor: 5.911

3.  Synthesis of New S-S and C-C Bonds by Photoinitiated Radical Recombination Reactions in the Gas Phase.

Authors:  Lance E Talbert; Xing Zhang; Nathan Hendricks; Arman Alizadeh; Ryan R Julian
Journal:  Int J Mass Spectrom       Date:  2019-04-05       Impact factor: 1.986

4.  Ultraviolet Photodissociation Mass Spectrometry for Analysis of Biological Molecules.

Authors:  Jennifer S Brodbelt; Lindsay J Morrison; Inês Santos
Journal:  Chem Rev       Date:  2019-12-18       Impact factor: 60.622

5.  Ion Activation Methods for Peptides and Proteins.

Authors:  Luis A Macias; Inês C Santos; Jennifer S Brodbelt
Journal:  Anal Chem       Date:  2019-11-12       Impact factor: 6.986

6.  Ultraviolet Photodissociation of Tryptic Peptide Backbones at 213 nm.

Authors:  Lars Kolbowski; Adam Belsom; Juri Rappsilber
Journal:  J Am Soc Mass Spectrom       Date:  2020-05-22       Impact factor: 3.109

  6 in total

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