Literature DB >> 29623532

Genome Editing in Induced Pluripotent Stem Cells using CRISPR/Cas9.

Ronen Ben Jehuda1,2,3,4, Yuval Shemer1,2,3, Ofer Binah5,6,7.   

Abstract

The development of the reprogramming technology led to generation of induced Pluripotent Stem Cells (iPSC) from a variety of somatic cells. Ever since, fast growing knowledge of different efficient protocols enabled the differentiation of these iPSCs into different cells types utilized for disease modeling. Indeed, iPSC-derived cells have been increasingly used for investigating molecular and cellular pathophysiological mechanisms underlying inherited diseases. However, a major barrier in the field of iPSC-based disease modeling relies on discriminating between the effects of the causative mutation and the genetic background of these cells. In the past decade, researchers have made great improvement in genome editing techniques, with one of the latest being CRISPR/Cas9. Using a single non-sequence specific protein combined with a small guiding RNA molecule, this state-of-the-art approach enables modifications of genes with high efficiency and accuracy. By so doing, this technique enables the generation of isogenic controls or isogenic mutated cell lines in order to focus on the pathologies caused by a specific mutation. In this article, we review the latest studies combining iPSC and CRISPR/Cas9 technologies for the investigation of the molecular and cellular mechanisms underlying inherited diseases including immunological, metabolic, hematological, neurodegenerative and cardiac diseases.

Entities:  

Keywords:  CRISPR; Cas9; iPSC

Mesh:

Year:  2018        PMID: 29623532     DOI: 10.1007/s12015-018-9811-3

Source DB:  PubMed          Journal:  Stem Cell Rev Rep        ISSN: 2629-3277            Impact factor:   5.739


  101 in total

1.  Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity.

Authors:  F Ann Ran; Patrick D Hsu; Chie-Yu Lin; Jonathan S Gootenberg; Silvana Konermann; Alexandro E Trevino; David A Scott; Azusa Inoue; Shogo Matoba; Yi Zhang; Feng Zhang
Journal:  Cell       Date:  2013-08-29       Impact factor: 41.582

2.  Design of polydactyl zinc-finger proteins for unique addressing within complex genomes.

Authors:  Q Liu; D J Segal; J B Ghiara; C F Barbas
Journal:  Proc Natl Acad Sci U S A       Date:  1997-05-27       Impact factor: 11.205

3.  Phenotypic screening with human iPS cell-derived cardiomyocytes: HTS-compatible assays for interrogating cardiac hypertrophy.

Authors:  Coby Carlson; Chad Koonce; Natsuyo Aoyama; Shannon Einhorn; Steve Fiene; Arne Thompson; Brad Swanson; Blake Anson; Steven Kattman
Journal:  J Biomol Screen       Date:  2013-09-26

4.  Transfusion independence and HMGA2 activation after gene therapy of human β-thalassaemia.

Authors:  Marina Cavazzana-Calvo; Emmanuel Payen; Olivier Negre; Gary Wang; Kathleen Hehir; Floriane Fusil; Julian Down; Maria Denaro; Troy Brady; Karen Westerman; Resy Cavallesco; Beatrix Gillet-Legrand; Laure Caccavelli; Riccardo Sgarra; Leila Maouche-Chrétien; Françoise Bernaudin; Robert Girot; Ronald Dorazio; Geert-Jan Mulder; Axel Polack; Arthur Bank; Jean Soulier; Jérôme Larghero; Nabil Kabbara; Bruno Dalle; Bernard Gourmel; Gérard Socie; Stany Chrétien; Nathalie Cartier; Patrick Aubourg; Alain Fischer; Kenneth Cornetta; Frédéric Galacteros; Yves Beuzard; Eliane Gluckman; Frederick Bushman; Salima Hacein-Bey-Abina; Philippe Leboulch
Journal:  Nature       Date:  2010-09-16       Impact factor: 49.962

5.  ABCA1 is the cAMP-inducible apolipoprotein receptor that mediates cholesterol secretion from macrophages.

Authors:  J F Oram; R M Lawn; M R Garvin; D P Wade
Journal:  J Biol Chem       Date:  2000-11-03       Impact factor: 5.157

Review 6.  Theoretic applicability of antisense-mediated exon skipping for Duchenne muscular dystrophy mutations.

Authors:  Annemieke Aartsma-Rus; Ivo Fokkema; Jan Verschuuren; Ieke Ginjaar; Judith van Deutekom; Gert-Jan van Ommen; Johan T den Dunnen
Journal:  Hum Mutat       Date:  2009-03       Impact factor: 4.878

7.  Patient iPSC-Derived Neurons for Disease Modeling of Frontotemporal Dementia with Mutation in CHMP2B.

Authors:  Yu Zhang; Benjamin Schmid; Nanett K Nikolaisen; Mikkel A Rasmussen; Blanca I Aldana; Mikkel Agger; Kirstine Calloe; Tina C Stummann; Hjalte M Larsen; Troels T Nielsen; Jinrong Huang; Fengping Xu; Xin Liu; Lars Bolund; Morten Meyer; Lasse K Bak; Helle S Waagepetersen; Yonglun Luo; Jørgen E Nielsen; Bjørn Holst; Christian Clausen; Poul Hyttel; Kristine K Freude
Journal:  Stem Cell Reports       Date:  2017-02-16       Impact factor: 7.765

8.  Genome editing with RNA-guided Cas9 nuclease in zebrafish embryos.

Authors:  Nannan Chang; Changhong Sun; Lu Gao; Dan Zhu; Xiufei Xu; Xiaojun Zhu; Jing-Wei Xiong; Jianzhong Jeff Xi
Journal:  Cell Res       Date:  2013-03-26       Impact factor: 25.617

9.  Long-term efficacy of systemic multiexon skipping targeting dystrophin exons 45-55 with a cocktail of vivo-morpholinos in mdx52 mice.

Authors:  Yusuke Echigoya; Yoshitsugu Aoki; Bailey Miskew; Dharminder Panesar; Aleksander Touznik; Tetsuya Nagata; Jun Tanihata; Akinori Nakamura; Kanneboyina Nagaraju; Toshifumi Yokota
Journal:  Mol Ther Nucleic Acids       Date:  2015-02-03       Impact factor: 10.183

10.  Seamless gene correction of β-thalassemia mutations in patient-specific iPSCs using CRISPR/Cas9 and piggyBac.

Authors:  Fei Xie; Lin Ye; Judy C Chang; Ashley I Beyer; Jiaming Wang; Marcus O Muench; Yuet Wai Kan
Journal:  Genome Res       Date:  2014-08-05       Impact factor: 9.043

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  37 in total

1.  Human induced pluripotent stem cell line with genetically encoded fluorescent voltage indicator generated via CRISPR for action potential assessment post-cardiogenesis.

Authors:  Yao-Hui Sun; Hillary K J Kao; Che-Wei Chang; Alexander Merleev; James L Overton; Dalyir Pretto; Sergey Yechikov; Emanual Maverakis; Nipavan Chiamvimonvat; James W Chan; Deborah K Lieu
Journal:  Stem Cells       Date:  2019-09-30       Impact factor: 6.277

2.  Generation of multi-cellular human liver organoids from pluripotent stem cells.

Authors:  Wendy L Thompson; Takanori Takebe
Journal:  Methods Cell Biol       Date:  2020-05-22       Impact factor: 1.441

3.  Generation of NPHP1 knockout human pluripotent stem cells by a practical biallelic gene deletion strategy using CRISPR/Cas9 and ssODN.

Authors:  Yuta Nakano; Koichiro Susa; Tomoki Yanagi; Yuichi Hiraoka; Takefumi Suzuki; Takayasu Mori; Fumiaki Ando; Shintaro Mandai; Tamami Fujiki; Tatemitsu Rai; Shinichi Uchida; Eisei Sohara
Journal:  In Vitro Cell Dev Biol Anim       Date:  2022-02-14       Impact factor: 2.416

4.  Using CRISPR-Cas9 to Dissect Cancer Mutations in Cell Lines.

Authors:  Shady Sayed; Duran Sürün; Jovan Mircetic; Olga Alexandra Sidorova; Frank Buchholz
Journal:  Methods Mol Biol       Date:  2022

Review 5.  Adventures and Advances in Time Travel With Induced Pluripotent Stem Cells and Automated Patch Clamp.

Authors:  Kadla R Rosholm; Beatrice Badone; Stefania Karatsiompani; David Nagy; Fitzwilliam Seibertz; Niels Voigt; Damian C Bell
Journal:  Front Mol Neurosci       Date:  2022-06-22       Impact factor: 6.261

6.  Cell Cluster Sorting in Automated Differentiation of Patient-specific Induced Pluripotent Stem Cells Towards Blood Cells.

Authors:  Zhiyao Ma; Marcelo Augusto Szymanskide Toledo; Paul Wanek; Mohamed H Elsafi Mabrouk; Francis Smet; Rock Pulak; Simon Pieske; Tobias Piotrowski; Werner Herfs; Christian Brecher; Robert H Schmitt; Wolfgang Wagner; Martin Zenke
Journal:  Front Bioeng Biotechnol       Date:  2022-05-12

Review 7.  Organs-on-chips: into the next decade.

Authors:  Lucie A Low; Christine Mummery; Brian R Berridge; Christopher P Austin; Danilo A Tagle
Journal:  Nat Rev Drug Discov       Date:  2020-09-10       Impact factor: 84.694

Review 8.  hiPSCs in cardio-oncology: deciphering the genomics.

Authors:  Emily A Pinheiro; K Ashley Fetterman; Paul W Burridge
Journal:  Cardiovasc Res       Date:  2019-04-15       Impact factor: 10.787

Review 9.  CRISPR-Cas and Its Wide-Ranging Applications: From Human Genome Editing to Environmental Implications, Technical Limitations, Hazards and Bioethical Issues.

Authors:  Roberto Piergentili; Alessandro Del Rio; Fabrizio Signore; Federica Umani Ronchi; Enrico Marinelli; Simona Zaami
Journal:  Cells       Date:  2021-04-21       Impact factor: 7.666

Review 10.  Joint-on-chip platforms: entering a new era of in vitro models for arthritis.

Authors:  Carlo Alberto Paggi; Liliana Moreira Teixeira; Séverine Le Gac; Marcel Karperien
Journal:  Nat Rev Rheumatol       Date:  2022-01-20       Impact factor: 32.286

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