| Literature DB >> 29618362 |
Zhongzhong Chen1,2, Yunping Lei3, Xuanye Cao3, Yufang Zheng1,2,4, Fang Wang5, Yihua Bao5, Rui Peng1, Richard H Finnell6,7,8,9, Ting Zhang10, Hongyan Wang11,12,13.
Abstract
BACKGROUND: Mouse homozygous mutants in Wnt/planar cell polarity (PCP) pathway genes have been shown to cause neural tube defects (NTDs) through the disruption of normal morphogenetic processes critical to neural tube closure (NTC). Knockout mice that are heterozygotes of single PCP genes likely fail to produce NTD phenotypes, yet damaging variants detected in human NTDs are almost always heterozygous, suggesting that other deleterious interacting variants are likely to be present. Nonetheless, the Wnt/PCP pathway remains a genetic hotspot. Addressing these issues is essential for understanding the genetic etiology of human NTDs.Entities:
Keywords: CELSR; Neural tube defects; PCP (planar cell polarity); Variant; Wnt
Mesh:
Substances:
Year: 2018 PMID: 29618362 PMCID: PMC5885375 DOI: 10.1186/s12920-018-0355-9
Source DB: PubMed Journal: BMC Med Genomics ISSN: 1755-8794 Impact factor: 3.063
Fig. 1Frequently mutated genes and driver genes detected in human NTDs. a Frequently mutated genes across individual human NTDs. Wnt/PCP genes are shown according to decreasing mutational frequency. NTD samples are displayed as columns. Right bar depicts absolute number of rare mutations in each gene. b Driver genes identified in human NTDs using OncodriveCLUST
Fig. 2Mapping of rare damaging mutations in the CELSR1, CELSR2, CELSR3 genes in human NTDs
Combined rare damaging variants among Wnt/PCP genes in human NTD samples
| Sample | Gene | Variant | Chr. | Positiona | Minor/major allele | Sex | Phenotypeb | SIFTc | PP2d | MAF in ExACe |
|---|---|---|---|---|---|---|---|---|---|---|
| NTD_27 |
| p.Thr2026Met | 1 | 109,810,233 | T/C | M | SB | D | D | 0.000009415 |
|
| p.Asp403Asn | 3 | 183,885,376 | A/G | D | P | NAf | |||
| NTD_39 |
| p.Arg2480Cys | 1 | 109,813,177 | T/C | M | SB | D | D | 0.00003766 |
|
| p.Leu383Gln | 2 | 202,900,518 | A/T | D | D | NA | |||
| NTD_122 |
| p.Arg1990His | 1 | 109,808,784 | A/G | M | EC | D | P | 0.0001318 |
|
| p.Arg1194His | 3 | 48,696,487 | T/C | D | D | 0.00002825 | |||
| NTD_15 |
| p.Arg386Cys | 12 | 12,334,194 | A/G | F | AE,SB | D | D | 0.000273 |
|
| p.Arg714His | 22 | 46,930,927 | T/C | D | D | NA | |||
| NTD_56 |
| p.Arg2626Cys | 1 | 109,814,294 | T/C | NA | SB | D | P | 0.0004425 |
|
| p.Trp242Leu | 2 | 208,632,739 | A/C | D | D | NA | |||
| NTD_19 |
| p.Arg207His | 1 | 116,206,697 | A/G | F | SB | D | D | 0.00001883 |
|
| p.Thr1086Met | 22 | 46,929,811 | A/G | D | D | 0.0001318 |
aPositions are given in bp from GRCh37
bSB, spinabifida; EC, encephalocele; AE, anencephaly
cSIFT predictions: D, deleterious
dPolyPhen2 (PP2) predictions: D, probably damaging; P, possibly damaging
eMAF from Exome Aggregation Consortium (ExAC) database
fNot available
Fig. 3Combination of rare damaging mutations in CELSR2 p.Thr2026Met and DVL3 p.Asp403Asn in an individual showed the combined effect on down regulating PCP pathway. a Confirmation of CELSR2 p.Thr2026Met and DVL3 p.Asp403Asn by sanger sequencing. b CELSR2 p.Thr2026Met transfection downregulated PCP signal in HEK293T cell line. c DVL3 p.Asp403Asn disrupted DVL3 interaction with VANGL2. d DVL3 p.Asp403Asn transfection affects canonical Wnt and PCP signaling in HEK293T cell line. e DVL3 p.Asp403Asn and CELSR2 p.Thr2026Met both down regulated PCP signal, the combination of DVL3 p.Asp403Asn and CELSR2 p.Thr2026Met had lowest PCP signal