| Literature DB >> 29617831 |
Omar Vergara-Díaz1, Fadia Chairi1, Rubén Vicente1, Jose A Fernandez-Gallego1, Maria Teresa Nieto-Taladriz2, Nieves Aparicio3, Shawn C Kefauver1, José Luis Araus1.
Abstract
The effects of leaf dorsoventrality and its interaction with environmentally induced changes in the leaf spectral response are still poorly understood, particularly for isobilateral leaves. We investigated the spectral performance of 24 genotypes of field-grownEntities:
Mesh:
Substances:
Year: 2018 PMID: 29617831 PMCID: PMC5972577 DOI: 10.1093/jxb/ery109
Source DB: PubMed Journal: J Exp Bot ISSN: 0022-0957 Impact factor: 6.992
Geographic, climatic, agronomic, and soil information for each study site
| Zamadueñas experimental station | Colmenar de Oreja experimental station | |
|---|---|---|
| Altitude (m asl) | 700 | 590 |
| Co-ordinates | 41°42'N, 4°42'W | 40°04'N, 3°31'W |
| Mean temp. | 10.73 | 13.01 |
| Max. mea n temp. | 17.45 | 21.45 |
| Min. mean temp. | 4.64 | 5.36 |
| Precipitation | 258.4 | 206.8 |
| Sowing date | 24 November 2014 | 21 November 2014 |
| Harvest date | 22 July 2015 | 20 July 2015 |
| Sowing density (seeds m−2) | 250 | 250 |
| Plot surface (m2) | 10.5 (7 × 1.5) | 10.5 (7 × 1.5) |
| Irrigation provided | 125 | 180 |
| Fertilization | ||
| First application | 300 kg ha−1 NPK 8:15:15 | 400 kg ha−1 NPK 15:15:15 |
| Second application | 300 kg ha−1 CAN 27%N | 150 kg ha−1 Urea 46% |
| Soil texture | Loam | Clay-loam |
| Soil pH | 8.44 | 8.1 |
During the growing season.
In the irrigated treatments.
Means and deviations of grain yield, leaf blade length and width, leaf SPAD readings, leaf nitrogen and carbon concentration (%N and %C), and its ratio (C:N), grain and leaf stable carbon isotope composition (δ13C), and the canopy temperature depression (CTD) for each water regime (R+, irrigated; R–, rainfed) along with the significance level of the respective one-way ANOVA
| Water regime | ANOVA | ||
|---|---|---|---|
| R+ | R– |
| |
| Grain y ield (Mg ha−1) | 6.95 | 4.81 | <0.001 |
| 0.097 | 0.097 | ||
| Leaf length (cm) | 20.9 | 19.11 | <0.001 |
| 4.35 | 3.36 | ||
| Leaf width (cm) | 1.679 | 1.547 | 0.038 |
| 0.484 | 0.257 | ||
| SPAD reading | 55.467 | 55.692 | 0.699 |
| 5.189 | 4.621 | ||
| Plot CTD (°C) | 4.89 | 0.63 | <0.001 |
| 1.199 | 1.92 | ||
| Leaf C (%) | 40.13 | 40.42 | 0.486 |
| 3.46 | 3.36 | ||
| Leaf N (%) | 4.045 | 3.893 | <0.001 |
| 0.362 | 0.385 | ||
| Leaf C:N ratio | 9.95 | 10.46 | <0.001 |
| 0.798 | 1.098 | ||
| Leaf δ13C (‰) | –28.1 | –27.83 | <0.001 |
| 0.635 | 0.472 | ||
| Grain δ13C (‰) | –26.16 | –25.34 | <0.001 |
| 0.494 | 1.18 | ||
Fig. 1.Leaf reflectance spectra in irrigated (grey line) and rainfed (black line) water conditions for the entire set of records (A, n=576) and separated according to the leaf side measured, either in the adaxial (B, n=288) or in the abaxial (C) leaf side. Below: the respective P-value graphs for each of the one-way comparisons performed for the reflectance throughout the spectrum, where the reflectance in each wavelength is considered as a variable and the water regime as a factor. Spectral regions where differences are significant (1–P-value >0.95) are shaded in black.
Fig. 2.Leaf reflectance spectra in adaxial (grey line) and abaxial (black line) sides of the leaf for the entire set of records (A, n=576) and separating into the two water conditions, under either irrigated (B, n=288) or rainfed (C, n=288) conditions. Below: the respective P-value graphs for each one-way comparison performed for the reflectance across the spectrum, where the reflectance in each wavelength is considered as a variable and the leaf side as a factor. Spectral regions where differences are significant (1–P-value >0.95) are filled in black.
Fig. 3.Contour maps of Pearson correlation coefficients between reflectances across the spectrum depending on water conditions (A) either in the irrigated (above the diagonal) or in the rainfed treatment (below the diagonal); and depending on leaf side (B), in the adaxial (above the diagonal) or the abaxial side of the leaf (below the diagonal).
Fig. 4.Principal component analysis of reflectances introduced as variables. Light green arrows correspond to wavebands belonging to the visible region, violet arrows correspond to wavebands in the NIR region, while dark green arrows correspond to wavebands in the SWIR region. Main levels of the factors (R+, irrigated; R–, rainfed; AD, adaxial side; AB, abaxial side) are represented as filled rhomboids, and interactions (Ad*R+; Ad*R–; Ab*R+; Ab*R–) are shown as empty triangles. The variables shown in the graph were those selected by fixing the fitness at 57%. Rλ corresponds to the reflectance at λ band.
Fig. 5.Clustered heatmap of the spectroradiometer parameters (on the right) grouped by its trait targeted as water-related SRIs (Water), anthocyanin-related SRIs (Anth), carotenoid-related SRIs (Car), chlorophyll-related SRIs (Chl), carotenoid to chlorophyll ratio-related SRIs (Car/Chl), narrowband greenness indices (NBG), broadband greenness indices (BBG); other SRIs including nitrogen- and structural-related indices and estimates from the PROSPECT model (PROSPECT). At the top, a dendrogram resulting from the clustering analysis, with labels in bold indicating the main levels of the factors (R+, irrigated; R–, rainfed; AD, adaxial side; AB, abaxial side) and the interactions (Ad*R+; Ad*R–; Ab*R+; Ab*R–). The red–blue colour scale was obtained by Z-score transformation of the actual values.
Fig. 6.Flag leaf transverse section images of two durum wheat genotypes; (A, C) var. Tussur; (B, D) var. Avispa; grown under irrigated (A, B) and rainfed (C, D) conditions.
Means of the leaf section anatomical metrics for each water regime (R+, irrigated; R–, rainfed) and leaf side along with the significance levels of the respective two-way ANOVA
| Water regime | Leaf side | Adaxial | Abaxial | Significance | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| R+ | R- | Adaxial | Abaxial | R+ | R- | R+ | R- | PWR | PLS | PWR*LS | |
| Leaf | |||||||||||
| Thickness (µm) | 199.98 | 176.23 | - | - | - | - | - | - | .065 | - | - |
| Perimeter/area (µm-1) | 0.112 | 0.118 | - | - | - | - | - | - | .350 | - | - |
| Epidermis area/Leaf area | 0.177 | 0.185 | - | - | - | - | - | - | .249 | - | - |
| Mesophyll | - | - | - | - | - | - | - | - | |||
| Cell area (µm2) | 577.17 | 407.89 | - | - | - | - | - | - | .001 | - | - |
| Cell perimeter (µm) | 111.47 | 88.80 | - | - | - | - | - | - | .000 | - | - |
| Cell area/Cell perimeter (µm) | 5.04 | 4.42 | - | - | - | - | - | - | .006 | - | - |
| Xylem vessels | |||||||||||
| Major diameter (µm) | 32.50 | 23.28 | - | - | - | - | - | - | .011 | - | - |
| Vessels area (µm2) | 544.34 | 281.69 | - | - | - | - | - | - | .008 | - | - |
| Epidermis | |||||||||||
| Thickness (µm) | 15.91 | 15.72 | 17.06 | 14.57 | 17.35 | 16.77 | 14.46 | 14.67 | .740 | .000 | .477 |
| Area/leaf area | .089 | .092 | .100 | .081 | .099 | .102 | .078 | .083 | .192 | .000 | .784 |
| Cell area (µm2) | 220.9 | 237.5 | 294.7 | 163.7 | 278.3 | 311.2 | 163.5 | 163.9 | .385 | .000 | .398 |
| Wall thickness (µm) | 3.988 | 4.066 | 3.581 | 4.473 | 3.621 | 3.541 | 4.355 | 4.592 | .643 | .000 | .352 |
Fig. 7.Scatter plot graphs showing correlations between anatomical leaf section traits (EaLar, epidermis sectional area to leaf sectional area ratio; ECa, epidermis cell sectional area; MCa, mesophyll cell sectional area; MCp, mesophyll cell sectional perimeter; Mcapr, mesophyll cell sectional area to perimeter ratio) and spectral reflectance indices (the water-related indices NDWI and NDII; the nitrogen-related index NDNI; the chlorophyll-related indices RENDVI and NPQI; the flavonol-related index FRI; the anthocyanin-related index mARI, and the lignin-related index NDLI) for the subset of plots selected.
Multiple regression analyses for grain yield prediction employing the adaxial, abaxial, or canopy reflectances
| 1st Approach - Backward stepwise | |||
|---|---|---|---|
| Adaxial | Abaxial | Canopy | |
| R2 | 0.732 | 0.795 | 0.925 |
| adjusted R2 | 0.637 | 0.713 | 0.903 |
| p-value | < 0.001 | < 0.001 | < 0.001 |
| error of prediction | 0.963 | 0.858 | 0.499 |
|
| |||
|
|
|
| |
| R2 actual vs estimated | 0.384 | 0.552 | 0.747 |
| p-value | < 0.001 | < 0.001 | < 0.001 |
For the first approach, the spectral reflectance indices (SRIs) calculated at the three levels (from adaxial, abaxial, and canopy measurements) were set as variables in a backward stepwise analysis. For the second approach, three LASSO regression models were performed with the whole spectrum at the three mentioned levels. Each model was obtained using a training set (75% of data), and its robustness was assessed by its respective accuracy in predicting yield (R2) for the test set (25% of data).