| Literature DB >> 29614039 |
Dionisio Andújar1, Mikel Calle2, César Fernández-Quintanilla3, Ángela Ribeiro4, José Dorado5.
Abstract
Sensing advances in plant phenotyping are of vital importance in basic and applied plant research. Plant phenotyping enables the modeling of complex shapes, which is useful, for example, in decision-making for agronomic management. In this sense, 3D processing algorithms for plant modeling is expanding rapidly with the emergence of new sensors and techniques designed to morphologically characterize. However, there are still some technical aspects to be improved, such as an accurate reconstruction of end-details. This study adapted low-cost techniques, Structure from Motion (SfM) and MultiView Stereo (MVS), to create 3D models for reconstructing plants of three weed species with contrasting shape and plant structures. Plant reconstruction was developed by applying SfM algorithms to an input set of digital images acquired sequentially following a track that was concentric and equidistant with respect to the plant axis and using three different angles, from a perpendicular to top view, which guaranteed the necessary overlap between images to obtain high precision 3D models. With this information, a dense point cloud was created using MVS, from which a 3D polygon mesh representing every plants' shape and geometry was generated. These 3D models were validated with ground truth values (e.g., plant height, leaf area (LA) and plant dry biomass) using regression methods. The results showed, in general, a good consistency in the correlation equations between the estimated values in the models and the actual values measured in the weed plants. Indeed, 3D modeling using SfM algorithms proved to be a valuable methodology for weed phenotyping, since it accurately estimated the actual values of plant height and LA. Additionally, image processing using the SfM method was relatively fast. Consequently, our results indicate the potential of this budget system for plant reconstruction at high detail, which may be usable in several scenarios, including outdoor conditions. Future research should address other issues, such as the time-cost relationship and the need for detail in the different approaches.Entities:
Keywords: RGB imagery; digital surface models; multi-view stereo; plant phenotyping; structure from motion
Year: 2018 PMID: 29614039 PMCID: PMC5948741 DOI: 10.3390/s18041077
Source DB: PubMed Journal: Sensors (Basel) ISSN: 1424-8220 Impact factor: 3.576
Figure 1Example of a Set of images taken around a weed plant during image acquisition.
Figure 2Example of RGB images (left) used to quantify LA, after their transformation to binary images (right) and subsequent application of Otsu’s thresholding method.
Figure 3Model processing for distance and leaf area extraction.
Figure 4Examples of some different weed models.
Figure 5Regression analyses comparing actual weed height versus estimated height using 3D modeling.
Figure 6Regression analyses comparing actual LA and estimated LA using 3D modeling.
Figure 7Regression analyses comparing estimated LA and actual dry biomass weight.