| Literature DB >> 29610669 |
Saija Ahonen1, Ian Seath2, Clare Rusbridge3,4, Susan Holt2, Gill Key2, Travis Wang1, Peixiang Wang1, Berge A Minassian1,5.
Abstract
BACKGROUND: Canine DNA-testing has become an important tool in purebred dog breeding and many breeders use genetic testing results when planning their breeding strategies. In addition, information obtained from testing of hundreds dogs in one breed gives valuable information about the breed-wide genotype frequency of disease associated allele. Lafora disease is a late onset, recessively inherited genetic disease which is diagnosed in Miniature Wirehaired Dachshunds (MWHD). It is one of the most severe forms of canine epilepsy leading to neurodegeneration and, frequently euthanasia within a few years of diagnosis. Canine Lafora disease is caused by a dodecamer repeat expansion mutation in the NHLRC1 gene and a DNA test is available to identify homozygous dogs at risk, carriers and dogs free of the mutation.Entities:
Keywords: Canine polyglucosan storage disease; DNA testing; Genetic diversity; Miniature Wirehaired Dachshund; Progressive myoclonic epilepsy
Year: 2018 PMID: 29610669 PMCID: PMC5869781 DOI: 10.1186/s40575-018-0058-8
Source DB: PubMed Journal: Canine Genet Epidemiol ISSN: 2052-6687
Fig. 1Genotyping is performed using Southern blot. Southern blot is used for genotyping as PCR based methods cannot reliably distinguish the different genotypes due to the type of the mutation. The affected dogs (A) are homozygous for the dodecamer repeat expansion mutation with multiple dodecamer repeats, carrier (C) dogs have the normal and mutated allele and clear dogs (WT) have three copies of the repeat [8]
Number and genotype frequency of tested MWHDs and estimation of the mutation allele frequency
| Number of dogs | Genotype frequency (%) | Mutation allele frequency | ||||||
|---|---|---|---|---|---|---|---|---|
| Total | Clear | Carrier | Homozygous | Clear | Carrier | Homozygous | ||
| Total | 733 | 448 | 234 | 51 | 61.1 | 31.9 | 7.0 | 0.2 |
| Australia | 17 | 16 | 1 | 0 | 94.1 | 5.9 | 0 | 0.03 |
| Europea | 604 | 363 | 202 | 39 | 60.1 | 33.4 | 6.5 | 0.2 |
| UK only | 548 | 316 | 193 | 39 | 57.7 | 35.2 | 7.1 | 0.2 |
| North-America | 61 | 40 | 17 | 4 | 65.6 | 27.9 | 6.6 | 0.2 |
aincluding UK
A total of 733 MWHDs were DNA tested in this study. Within the tested dogs 7.0% were homozygous for the NHLRC1 mutation and at risk for LD and 31.9% of the tested dogs carries the mutation. Similar frequencies were observed among the European population, including dogs of UK origin and in the dataset of dogs originating from UK only. Only small cohorts originated from Australia and North-America
The MWHDs originated from 20 different countries
| Number of dogs | Genotype frequency (%) | ||||||
|---|---|---|---|---|---|---|---|
| Country | Total | Clear | Carrier | Homozygous | Clear | Carrier | Homozygous |
| Australia | 17 | 16 | 1 | 0 | 94.1 | 5.9 | |
| Canada | 1 | 1 | 0 | 0 | 100 | ||
| Czech Republic | 2 | 1 | 1 | 0 | 50.0 | 50.0 | |
| Estonia | 1 | 1 | 0 | 0 | 100 | ||
| Finland | 6 | 4 | 2 | 0 | 66.7 | 33.3 | |
| France | 3 | 0 | 3 | 0 | 100 | ||
| Germany | 3 | 3 | 0 | 0 | 100 | ||
| Hungary | 2 | 1 | 1 | 0 | 50.0 | 50.0 | |
| Ireland | 2 | 2 | 0 | 0 | 100 | ||
| Italy | 3 | 3 | 0 | 0 | 100 | ||
| Latvia | 2 | 1 | 1 | 0 | 50.0 | 50.0 | |
| Norway | 1 | 1 | 0 | 0 | 100 | ||
| Poland | 2 | 2 | 0 | 0 | 100 | ||
| Russia | 20 | 20 | 0 | 0 | 100 | ||
| Serbia | 2 | 2 | 0 | 0 | 100 | ||
| Spain | 3 | 3 | 0 | 0 | 100 | ||
| Sweden | 3 | 2 | 1 | 0 | 66.7 | 33.3 | |
| Ukraine | 1 | 1 | 0 | 0 | 100 | ||
| United Kingdom | 548 | 316 | 193 | 39 | 57.7 | 35.2 | 7.1 |
| United States | 60 | 39 | 17 | 4 | 65 | 28.3 | 6.7 |
| Unknown | 51 | 29 | 14 | 8 | 56.9 | 27.5 | 15.7 |
| Total | 733 | 448 | 234 | 51 | 61.1 | 31.9 | 7.0 |
Most of the tested dogs were from European countries, but samples were also sent from Australia, Canada and the United States. As the UK Kennel Club has promoted the LD test among the UK MWHD breeders and owners, most of the dogs included in this study originated from the UK
Number and percentage of dogs tested based on gender
| Number of dogs | % of total | Clear | Carrier | Homozygous | ||||
|---|---|---|---|---|---|---|---|---|
| Total | % | Total | % | Total | % | |||
| Male | 191 | 26.1 | 126 | 66.0 | 55 | 28.8 | 10 | 5.2 |
| Female | 502 | 68.5 | 298 | 59.4 | 169 | 33.7 | 35 | 7.0 |
| Unknown | 40 | 5.5 | 24 | 60.0 | 10 | 25.0 | 6 | 15.0 |
| Total | 733 | 448 | 234 | 51 | ||||
More females were tested as commonly fever males are used for breeding. Among the genotype groups, clear, carrier and homozygous, significantly more females were included compared to the same groups among males
Fig. 2Yearly number of tested dogs and genotype frequencies. The frequency of the carrier and homozygous dogs at risk of Lafora has decreased after a few years of genetic testing. As a consequence the frequency of the clear dogs has increased
Yearly number and genotype frequency of the tested MWHDs
| Genotype frequency (%) | ||||||
|---|---|---|---|---|---|---|
| Year | 2012 | 2013 | 2014 | 2015 | 2016 | 2017 |
| Clear | 70.6 | 48.1 | 61.6 | 68.8 | 65.1 | 71.6 |
| Carrier | 23.5 | 41.5 | 31.5 | 25.4 | 29.5 | 25.7 |
| Homozygous | 5.9 | 10.4 | 6.8 | 5.8 | 5.4 | 2.7 |
| Total no. of dogs | 34 | 212 | 146 | 138 | 129 | 74 |
LD DNA test was developed in 2012 and after initial validation of the test in a small cohort of MWHDs the test has been offered since 2013. After a few years of genetic testing a decrease in the frequency of homozygous and carrier dogs can be observed and as a consequence the frequency of clear dogs has increased over the years. The slow decrease indicates that carrier dogs are kept as part of the breeding program to avoid compromising the genetic diversity of MWHDs
Yearly frequency of safe and at risk litter born in UK
| Year | 2012 | 2013 | 2014 | 2015 | 2016 | 2017 |
|---|---|---|---|---|---|---|
| Safe litter | 45.0 | 48.6 | 68.9 | 84.5 | 91.8 | 92.1 |
| At risk litter | 55.0 | 51.4 | 31.1 | 15.5 | 8.2 | 7.9 |
| Total no. of litters | 40 | 175 | 183 | 193 | 183 | 164 |
An increase was detected in the number of safe litters born in UK between 2012 and 2017. Subsequently there is a decrease in the number of unsafe litters indicating that breeders are using the genetic information obtained for the Lafora DNA test