Literature DB >> 29610314

Role of metabolic spatiotemporal dynamics in regulating biofilm colony expansion.

Federico Bocci1,2, Yoko Suzuki3, Mingyang Lu4, José N Onuchic5,2,6,7.   

Abstract

Cell fate determination is typically regulated by biological networks, yet increasing evidences suggest that cell-cell communication and environmental stresses play crucial roles in the behavior of a cell population. A recent microfluidic experiment showed that the metabolic codependence of two cell populations generates a collective oscillatory dynamic during the expansion of a Bacillus subtilis biofilm. We develop a modeling framework for the spatiotemporal dynamics of the associated metabolic circuit for cells in a colony. We elucidate the role of metabolite diffusion and the need of two distinct cell populations to observe oscillations. Uniquely, this description captures the onset and thereafter stable oscillatory dynamics during expansion and predicts the existence of damping oscillations under various environmental conditions. This modeling scheme provides insights to understand how cells integrate the information from external signaling and cell-cell communication to determine the optimal survival strategy and/or maximize cell fitness in a multicellular system.

Keywords:  biofilm expansion; metabolic codependence; oscillations; phenotypic differentiation; reaction−diffusion system

Mesh:

Substances:

Year:  2018        PMID: 29610314      PMCID: PMC5910808          DOI: 10.1073/pnas.1706920115

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  31 in total

1.  Temperature and pH affect the production of bacterial biofilm.

Authors:  A Hostacká; I Ciznár; M Stefkovicová
Journal:  Folia Microbiol (Praha)       Date:  2010-03-25       Impact factor: 2.099

2.  Phenotypic diversity, population growth, and information in fluctuating environments.

Authors:  Edo Kussell; Stanislas Leibler
Journal:  Science       Date:  2005-08-25       Impact factor: 47.728

3.  Directional sensing in eukaryotic chemotaxis: a balanced inactivation model.

Authors:  Herbert Levine; David A Kessler; Wouter-Jan Rappel
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-16       Impact factor: 11.205

Review 4.  Network motifs: theory and experimental approaches.

Authors:  Uri Alon
Journal:  Nat Rev Genet       Date:  2007-06       Impact factor: 53.242

5.  Noise in gene expression determines cell fate in Bacillus subtilis.

Authors:  Hédia Maamar; Arjun Raj; David Dubnau
Journal:  Science       Date:  2007-06-14       Impact factor: 47.728

6.  Simpson's paradox in a synthetic microbial system.

Authors:  John S Chuang; Olivier Rivoire; Stanislas Leibler
Journal:  Science       Date:  2009-01-09       Impact factor: 47.728

Review 7.  Design principles of regulatory networks: searching for the molecular algorithms of the cell.

Authors:  Wendell A Lim; Connie M Lee; Chao Tang
Journal:  Mol Cell       Date:  2013-01-24       Impact factor: 17.970

8.  Ion channels enable electrical communication in bacterial communities.

Authors:  Arthur Prindle; Jintao Liu; Munehiro Asally; San Ly; Jordi Garcia-Ojalvo; Gürol M Süel
Journal:  Nature       Date:  2015-10-21       Impact factor: 49.962

9.  Interrogating the topological robustness of gene regulatory circuits by randomization.

Authors:  Bin Huang; Mingyang Lu; Dongya Jia; Eshel Ben-Jacob; Herbert Levine; Jose N Onuchic
Journal:  PLoS Comput Biol       Date:  2017-03-31       Impact factor: 4.475

10.  Cis-interactions between Notch and Delta generate mutually exclusive signalling states.

Authors:  David Sprinzak; Amit Lakhanpal; Lauren Lebon; Leah A Santat; Michelle E Fontes; Graham A Anderson; Jordi Garcia-Ojalvo; Michael B Elowitz
Journal:  Nature       Date:  2010-04-25       Impact factor: 49.962

View more
  5 in total

1.  Metabolic basis of brain-like electrical signalling in bacterial communities.

Authors:  Rosa Martinez-Corral; Jintao Liu; Arthur Prindle; Gürol M Süel; Jordi Garcia-Ojalvo
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-06-10       Impact factor: 6.237

2.  Spatial transcriptomics of planktonic and sessile bacterial populations at single-cell resolution.

Authors:  Daniel Dar; Nina Dar; Long Cai; Dianne K Newman
Journal:  Science       Date:  2021-08-13       Impact factor: 63.714

3.  ChemChaste: Simulating spatially inhomogeneous biochemical reaction-diffusion systems for modeling cell-environment feedbacks.

Authors:  Connah G M Johnson; Alexander G Fletcher; Orkun S Soyer
Journal:  Gigascience       Date:  2022-06-17       Impact factor: 7.658

4.  Probabilistic Models for Predicting Mutational Routes to New Adaptive Phenotypes.

Authors:  Eric Libby; Peter A Lind
Journal:  Bio Protoc       Date:  2019-10-20

5.  Extending the minimal model of metabolic oscillations in Bacillus subtilis biofilms.

Authors:  Ravindra Garde; Bashar Ibrahim; Stefan Schuster
Journal:  Sci Rep       Date:  2020-03-27       Impact factor: 4.379

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.