| Literature DB >> 29603485 |
Ondřej Jurček1,2,3, Hennie Valkenier2,4, Rakesh Puttreddy1, Martin Novák3, Hazel A Sparkes2, Radek Marek3,5, Kari Rissanen1, Anthony P Davis2.
Abstract
Recent work has identified a bis-(p-nitrophenyl)ureidodecalin anion carrier as a promising candidate for biomedical applications, showing good activity for chloride transport in cells yet almost no cytotoxicity. To underpin further development of this and related compounds, a detailed structural and binding investigation is reported. Crystal structures of the transporter as five solvates confirm the diaxial positioning of urea groups while revealing a degree of conformational flexibility. Structures of complexes with Cl- , Br- , NO3- , SO42- and AcO- , supported by computational studies, show how the binding site can adapt to accommodate these anions. 1 H NMR binding studies revealed exceptionally high affinities for anions in DMSO, decreasing in the order SO42- >H2 PO4- ≈HCO3- ≈AcO- ≫HSO4- >Cl- >Br- >NO3- >I- . Analysis of the binding results suggests that selectivity is determined mainly by the H-bond acceptor strength of different anions, but is also modulated by receptor geometry.Entities:
Keywords: anions; host-guest interactions; hydrogen bonds; receptors; solid-state structures
Mesh:
Substances:
Year: 2018 PMID: 29603485 PMCID: PMC6055605 DOI: 10.1002/chem.201800537
Source DB: PubMed Journal: Chemistry ISSN: 0947-6539 Impact factor: 5.236
Figure 1Transporter 1 binding an anion X− (red), where X−=SO4 2−, HSO4 −, H2PO4 −, HCO3 −, NO3 −, AcO−, Cl−, Br− or I−. H‐bond donor NH groups are highlighted in blue.
C‐C‐N‐C torsion angles between the decalin and ureido groups in the solvates of transporter 1, giving 1 the potential to act as host for a range of different anions, as also indicated here and discussed below.[a]
| Solvate or | C‐C‐N‐C torsion angles | C‐C‐N‐C torsion angles |
|---|---|---|
| acetone | −72/+72 | +145/−145 |
| H2O | −78/+78 | +132/−132 |
| THF | −69/+69 | +134/−134 |
| DMSO | −81/+81 | +93/‐93 |
| MeOH | −165/+165 | +161/−161 |
|
| −112/+112 | +148/−148 |
|
| −69/+69 | +89/−89 |
|
| −91/+91 | +77/−77 |
|
| −68/+68 | +83/−83 |
|
| −75/+75 | +100/−100 |
[a] Due to the centrosymmetric space group two inverted sets of torsion angles apply: −72, +145 and +72, −145.
Figure 2X‐ray structures of transporter 1 solvates. a) Acetone, b) H2O, c) THF, d) DMSO and e) MeOH. The aromatic centroid‐to‐centroid distance is shown for each structure.
Binding and structural data for complexes of 1 with anions.
| Complex | Binding constants from | DFT binding | Literature Δ | Urea nitrogen–anion | ||
|---|---|---|---|---|---|---|
| Receptor[c] | Single arm[d] | Crystal structure | Molecular model | |||
|
| <5 | −16.1 | −6.3 (−12.6) | −65.7 | – | 3.68 (2), 3.63 (2) |
|
| 10 | −17.7 | −8.5 (−17.0) | −71.7 | 3.00, 3.11, 2.91, 2.98 | 3.07 (2), 2.89 (2) |
|
| 70 | −16.6 | −7.0 (−14.0) | −75.3 | 3.52, 3.48, 3.54, 3.44 | 3.48 (2), 3.42 (2) |
|
| 180 | −17.7 | −8.2 (−16.4) | – | – | 2.96 (2), 2.90, 2.91 |
|
| 670 | −16.9 | −7.7 (−15.4) | −81.3 | 3.30, 3.43, 3.27, 3.20 | 3.32 (2), 3.25, 3.22 |
|
| 40 000 | −22.8 | −13.1 (−26.2) | −87.2 | 2.86 (2), 2.80, 2.74 | 2.81 (2), 2.76, 2.78 |
|
| 42 000 | −20.2 | −11.7 (−23.4) | −80.1 | – | 2.98, 3.01, 2.93, 2.79 |
|
| 46 000 | −22.4 | −9.2 (−18.4) | −111.1 | – | 2.88, 2.86, 2.81, 2.80 |
|
| >105 [b] | −27.4 | −12.9 (−25.8) | −258.1 | 2.92, 2.93 (2), 2.87 (2), 2.94, 3.01, 3.00 | 2.90 (2), 3.01 (2), 2.98 (2), 3.30, 3.54 |
|
| – | −30.6 | −15.2 (−30.4) | – | – | 2.80, 2.75, 2.72, 2.69 |
[a] [D6]DMSO/H2O (200:1). [b] Weaker binding of a second sulfate anion forming 1⋅(SO ) was observed. [c] The binding energy was obtained by subtracting the total energies of the optimised anion and transporter from that of the anion–transporter complex in DMSO. [d] The binding energy was obtained by subtracting the total energy of the optimised anion and single arm [methyl(p‐nitrophenyl)urea] from that of the anion–arm complex in DMSO. Doubling these energies gives the values in parentheses, for comparison to the values for the preorganised receptor. [e] Distances from nitrogen atoms to halide anions, or to the nearest oxygen atom of oxoanions. Numbers in brackets refer to the multiplicity of identical distances to different nitrogen atoms.
Figure 3X‐ray crystal structures of a) 1⋅Cl,4 b) 1⋅Br, d) 1⋅AcO and e) 1⋅NO . Energy‐minimised models of c) 1⋅I and f) 1⋅HCO . The transporter is shown in ball‐and‐stick mode, and the anions in CPK mode. The countercations are omitted for clarity. The aromatic centroid‐to‐centroid distance is shown for each structure.
Figure 4a) X‐ray crystal structure of (1) . The transporter is shown in ball‐and‐stick mode, and the anion in CPK mode. b) A closer view of the H‐bonds around the sulfate anion in the dimer. The Me4N+ cation and solvent molecule are omitted for clarity. c) DFT model of 1⋅H . d) A closer view of the H‐bonds around the dihydrogenphosphate anion. H‐bonds are shown as black dashed lines.
Figure 5Downfield region of the 1H NMR spectra from the titration of receptor 1 (1 mm) with Bu4N+OAc− in [D6]DMSO with 0.5 % H2O. The inset shows the observed binding curve for NHa (blue) and the calculated fit for both NH signals (red).
Figure 6Correlation between the binding constants and the Gibbs free energies of hydration for anions considered in this work.