Literature DB >> 29596741

Cell-Free Optogenetic Gene Expression System.

Premkumar Jayaraman, Jing Wui Yeoh, Sudhaghar Jayaraman, Ai Ying Teh, Jingyun Zhang, Chueh Loo Poh.   

Abstract

Optogenetic tools provide a new and efficient way to dynamically program gene expression with unmatched spatiotemporal precision. To date, their vast potential remains untapped in the field of cell-free synthetic biology, largely due to the lack of simple and efficient light-switchable systems. Here, to bridge the gap between cell-free systems and optogenetics, we studied our previously engineered one component-based blue light-inducible Escherichia coli promoter in a cell-free environment through experimental characterization and mathematical modeling. We achieved >10-fold dynamic expression and demonstrated rapid and reversible activation of the target gene to generate oscillatory response. The deterministic model developed was able to recapitulate the system behavior and helped to provide quantitative insights to optimize dynamic response. This in vitro optogenetic approach could be a powerful new high-throughput screening technology for rapid prototyping of complex biological networks in both space and time without the need for chemical induction.

Entities:  

Keywords:  EL222; cell-free synthetic biology; optogenetics; spatiotemporal control

Mesh:

Substances:

Year:  2018        PMID: 29596741     DOI: 10.1021/acssynbio.7b00422

Source DB:  PubMed          Journal:  ACS Synth Biol        ISSN: 2161-5063            Impact factor:   5.110


  7 in total

Review 1.  Blue-Light Receptors for Optogenetics.

Authors:  Aba Losi; Kevin H Gardner; Andreas Möglich
Journal:  Chem Rev       Date:  2018-07-09       Impact factor: 60.622

Review 2.  Programming Bacteria With Light-Sensors and Applications in Synthetic Biology.

Authors:  Zedao Liu; Jizhong Zhang; Jiao Jin; Zilong Geng; Qingsheng Qi; Quanfeng Liang
Journal:  Front Microbiol       Date:  2018-11-08       Impact factor: 5.640

Review 3.  Controlling Synthetic Cell-Cell Communication.

Authors:  Jefferson M Smith; Razia Chowdhry; Michael J Booth
Journal:  Front Mol Biosci       Date:  2022-01-05

Review 4.  Modularize and Unite: Toward Creating a Functional Artificial Cell.

Authors:  Chen Wang; Junzhu Yang; Yuan Lu
Journal:  Front Mol Biosci       Date:  2021-11-29

5.  Synthetic cells with self-activating optogenetic proteins communicate with natural cells.

Authors:  Omer Adir; Mia R Albalak; Ravit Abel; Lucien E Weiss; Gal Chen; Amit Gruber; Oskar Staufer; Yaniv Kurman; Ido Kaminer; Jeny Shklover; Janna Shainsky-Roitman; Ilia Platzman; Lior Gepstein; Yoav Shechtman; Benjamin A Horwitz; Avi Schroeder
Journal:  Nat Commun       Date:  2022-04-28       Impact factor: 17.694

6.  Characterizing a New Fluorescent Protein for a Low Limit of Detection Sensing in the Cell-Free System.

Authors:  Caroline E Copeland; Jeehye Kim; Pearce L Copeland; Chloe J Heitmeier; Yong-Chan Kwon
Journal:  ACS Synth Biol       Date:  2022-07-19       Impact factor: 5.249

Review 7.  Controlling gene expression with light: a multidisciplinary endeavour.

Authors:  Denis Hartmann; Jefferson M Smith; Giacomo Mazzotti; Razia Chowdhry; Michael J Booth
Journal:  Biochem Soc Trans       Date:  2020-08-28       Impact factor: 5.407

  7 in total

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