Literature DB >> 29590032

Proteoforms as the next proteomics currency.

Lloyd M Smith1, Neil L Kelleher2.   

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Year:  2018        PMID： 29590032      PMCID： PMC5944612          DOI： 10.1126/science.aat1884

Source DB:  PubMed          Journal:  Science        ISSN： 0036-8075            Impact factor:   47.728


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  14 in total

1.  Extending top-down mass spectrometry to proteins with masses greater than 200 kilodaltons.

Authors:  Xuemei Han; Mi Jin; Kathrin Breuker; Fred W McLafferty
Journal:  Science       Date:  2006-10-06       Impact factor: 47.728

2.  Mass spectrometry identifies and quantifies 74 unique histone H4 isoforms in differentiating human embryonic stem cells.

Authors:  Doug Phanstiel; Justin Brumbaugh; W Travis Berggren; Kevin Conard; Xuezhu Feng; Mark E Levenstein; Graeme C McAlister; James A Thomson; Joshua J Coon
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-07       Impact factor: 11.205

3.  Proteoform: a single term describing protein complexity.

Authors:  Lloyd M Smith; Neil L Kelleher
Journal:  Nat Methods       Date:  2013-03       Impact factor: 28.547

4.  Protein identification using customized protein sequence databases derived from RNA-Seq data.

Authors:  Xiaojing Wang; Robbert J C Slebos; Dong Wang; Patrick J Halvey; David L Tabb; Daniel C Liebler; Bing Zhang
Journal:  J Proteome Res       Date:  2011-12-14       Impact factor: 4.466

5.  Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing.

Authors:  Xinping Yang; Jasmin Coulombe-Huntington; Shuli Kang; Gloria M Sheynkman; Tong Hao; Aaron Richardson; Song Sun; Fan Yang; Yun A Shen; Ryan R Murray; Kerstin Spirohn; Bridget E Begg; Miquel Duran-Frigola; Andrew MacWilliams; Samuel J Pevzner; Quan Zhong; Shelly A Trigg; Stanley Tam; Lila Ghamsari; Nidhi Sahni; Song Yi; Maria D Rodriguez; Dawit Balcha; Guihong Tan; Michael Costanzo; Brenda Andrews; Charles Boone; Xianghong J Zhou; Kourosh Salehi-Ashtiani; Benoit Charloteaux; Alyce A Chen; Michael A Calderwood; Patrick Aloy; Frederick P Roth; David E Hill; Lilia M Iakoucheva; Yu Xia; Marc Vidal
Journal:  Cell       Date:  2016-02-11       Impact factor: 41.582

Review 6.  Mass spectrometric analysis of histone proteoforms.

Authors:  Zuo-Fei Yuan; Anna M Arnaudo; Benjamin A Garcia
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2014-06-02       Impact factor: 10.745

7.  De novo derivation of proteomes from transcriptomes for transcript and protein identification.

Authors:  Vanessa C Evans; Gary Barker; Kate J Heesom; Jun Fan; Conrad Bessant; David A Matthews
Journal:  Nat Methods       Date:  2012-11-11       Impact factor: 28.547

8.  Mapping intact protein isoforms in discovery mode using top-down proteomics.

Authors:  John C Tran; Leonid Zamdborg; Dorothy R Ahlf; Ji Eun Lee; Adam D Catherman; Kenneth R Durbin; Jeremiah D Tipton; Adaikkalam Vellaichamy; John F Kellie; Mingxi Li; Cong Wu; Steve M M Sweet; Bryan P Early; Nertila Siuti; Richard D LeDuc; Philip D Compton; Paul M Thomas; Neil L Kelleher
Journal:  Nature       Date:  2011-10-30       Impact factor: 49.962

9.  RNA splicing is a primary link between genetic variation and disease.

Authors:  Yang I Li; Bryce van de Geijn; Anil Raj; David A Knowles; Allegra A Petti; David Golan; Yoav Gilad; Jonathan K Pritchard
Journal:  Science       Date:  2016-04-28       Impact factor: 47.728

10.  Elucidating Proteoform Families from Proteoform Intact-Mass and Lysine-Count Measurements.

Authors:  Michael R Shortreed; Brian L Frey; Mark Scalf; Rachel A Knoener; Anthony J Cesnik; Lloyd M Smith
Journal:  J Proteome Res       Date:  2016-03-16       Impact factor: 4.466
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  63 in total

1.  Quantitative Mass Spectrometry-Based Proteomics: An Overview.

Authors:  Svitlana Rozanova; Katalin Barkovits; Miroslav Nikolov; Carla Schmidt; Henning Urlaub; Katrin Marcus
Journal:  Methods Mol Biol       Date:  2021

2.  The Value of Activated Ion Electron Transfer Dissociation for High-Throughput Top-Down Characterization of Intact Proteins.

Authors:  Nicholas M Riley; Jacek W Sikora; Henrique S Seckler; Joseph B Greer; Ryan T Fellers; Richard D LeDuc; Michael S Westphall; Paul M Thomas; Neil L Kelleher; Joshua J Coon
Journal:  Anal Chem       Date:  2018-07-05       Impact factor: 6.986

3.  Top-Down Proteomics Reveals Myofilament Proteoform Heterogeneity among Various Rat Skeletal Muscle Tissues.

Authors:  Jake A Melby; Yutong Jin; Ziqing Lin; Trisha Tucholski; Zhijie Wu; Zachery R Gregorich; Gary M Diffee; Ying Ge
Journal:  J Proteome Res       Date:  2019-11-07       Impact factor: 4.466

4.  Capillary zone electrophoresis-tandem mass spectrometry using ultraviolet photodissociation (213 nm) for large-scale top-down proteomics.

Authors:  Elijah N McCool; Daoyang Chen; Wenxue Li; Yansheng Liu; Liangliang Sun
Journal:  Anal Methods       Date:  2019-05-07       Impact factor: 2.896

5.  Capillary Zone Electrophoresis-Tandem Mass Spectrometry with Activated Ion Electron Transfer Dissociation for Large-scale Top-down Proteomics.

Authors:  Elijah N McCool; Jean M Lodge; Abdul Rehman Basharat; Xiaowen Liu; Joshua J Coon; Liangliang Sun
Journal:  J Am Soc Mass Spectrom       Date:  2019-05-09       Impact factor: 3.109

Review 6.  Sample Multiplexing Strategies in Quantitative Proteomics.

Authors:  Albert B Arul; Renã A S Robinson
Journal:  Anal Chem       Date:  2018-12-18       Impact factor: 6.986

7.  A Top-Down Proteomics Platform Coupling Serial Size Exclusion Chromatography and Fourier Transform Ion Cyclotron Resonance Mass Spectrometry.

Authors:  Trisha Tucholski; Samantha J Knott; Bifan Chen; Paige Pistono; Ziqing Lin; Ying Ge
Journal:  Anal Chem       Date:  2019-02-25       Impact factor: 6.986

8.  High-Throughput Proteomics Enabled by a Photocleavable Surfactant.

Authors:  Kyle A Brown; Trisha Tucholski; Christian Eken; Samantha Knott; Yanlong Zhu; Song Jin; Ying Ge
Journal:  Angew Chem Int Ed Engl       Date:  2020-03-24       Impact factor: 15.336

9.  Comprehensive Characterization of the Recombinant Catalytic Subunit of cAMP-Dependent Protein Kinase by Top-Down Mass Spectrometry.

Authors:  Zhijie Wu; Yutong Jin; Bifan Chen; Morgan K Gugger; Chance L Wilkinson-Johnson; Timothy N Tiambeng; Song Jin; Ying Ge
Journal:  J Am Soc Mass Spectrom       Date:  2019-12-02       Impact factor: 3.109

10.  Proton Transfer Charge Reduction Enables High-Throughput Top-Down Analysis of Large Proteoforms.

Authors:  Romain Huguet; Christopher Mullen; Kristina Srzentić; Joseph B Greer; Ryan T Fellers; Vlad Zabrouskov; John E P Syka; Neil L Kelleher; Luca Fornelli
Journal:  Anal Chem       Date:  2019-11-22       Impact factor: 6.986
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