Literature DB >> 29577025

A simulations approach for meta-analysis of genetic association studies based on additive genetic model.

Majnu John1,2,3, Todd Lencz1,2,4, Anil K Malhotra1,2,4, Christoph U Correll1,2,4, Jian-Ping Zhang1,2,4.   

Abstract

Meta-analysis of genetic association studies is being increasingly used to assess phenotypic differences between genotype groups. When the underlying genetic model is assumed to be dominant or recessive, assessing the phenotype differences based on summary statistics, reported for individual studies in a meta-analysis, is a valid strategy. However, when the genetic model is additive, a similar strategy based on summary statistics will lead to biased results. This fact about the additive model is one of the things that we establish in this paper, using simulations. The main goal of this paper is to present an alternate strategy for the additive model based on simulating data for the individual studies. We show that the alternate strategy is far superior to the strategy based on summary statistics.

Entities:  

Keywords:  2 × 2 table; GWAS; additive model; genetic association studies; meta analysis; odds ratio; simulations; summary statistics

Year:  2018        PMID: 29577025      PMCID: PMC5863759          DOI: 10.1016/j.mgene.2018.02.004

Source DB:  PubMed          Journal:  Meta Gene        ISSN: 2214-5400


  4 in total

Review 1.  Genetic association studies: design, analysis and interpretation.

Authors:  Cathryn M Lewis
Journal:  Brief Bioinform       Date:  2002-06       Impact factor: 11.622

2.  Four-fold table cell frequencies imputation in meta analysis.

Authors:  Carlo Di Pietrantonj
Journal:  Stat Med       Date:  2006-07-15       Impact factor: 2.373

3.  Reconstructing 2 x 2 contingency tables from odds ratios using the Di Pietrantonj method: difficulties, constraints and impact in meta-analysis results.

Authors:  Areti Angeliki Veroniki; Marios Pavlides; Nikolaos A Patsopoulos; Georgia Salanti
Journal:  Res Synth Methods       Date:  2012-11-12       Impact factor: 5.273

Review 4.  Pharmacogenetic Associations of Antipsychotic Drug-Related Weight Gain: A Systematic Review and Meta-analysis.

Authors:  Jian-Ping Zhang; Todd Lencz; Ryan X Zhang; Masahiro Nitta; Lawrence Maayan; Majnu John; Delbert G Robinson; W Wolfgang Fleischhacker; Rene S Kahn; Roel A Ophoff; John M Kane; Anil K Malhotra; Christoph U Correll
Journal:  Schizophr Bull       Date:  2016-05-23       Impact factor: 9.306

  4 in total

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