Literature DB >> 29568823

Graph-Constrained Sparse Construction of Longitudinal Diffusion-Weighted Infant Atlases.

Jaeil Kim1, Geng Chen1, Weili Lin1, Pew-Thian Yap1, Dinggang Shen1.   

Abstract

Constructing longitudinal diffusion-weighted atlases of infant brains poses additional challenges due to the small brain size and the dynamic changes in the early developing brains. In this paper, we introduce a novel framework for constructing longitudinally-consistent diffusion-weighted infant atlases with improved preservation of structural details and diffusion characteristics. In particular, instead of smoothing diffusion signals by simple averaging, our approach fuses the diffusion-weighted images in a patch-wise manner using sparse representation with a graph constraint that encourages spatiotemporal consistency. Diffusion-weighted atlases across time points are jointly constructed for patches that are correlated in time and space. Compared with existing methods, including the one using sparse representation with l2,1 regularization, our approach generates longitudinal infant atlases with much richer and more consistent features of the developing infant brain, as shown by the experimental results.

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Year:  2017        PMID: 29568823      PMCID: PMC5858903          DOI: 10.1007/978-3-319-66182-7_6

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  12 in total

1.  Multi-contrast human neonatal brain atlas: application to normal neonate development analysis.

Authors:  Kenichi Oishi; Susumu Mori; Pamela K Donohue; Thomas Ernst; Lynn Anderson; Steven Buchthal; Andreia Faria; Hangyi Jiang; Xin Li; Michael I Miller; Peter C M van Zijl; Linda Chang
Journal:  Neuroimage       Date:  2011-01-26       Impact factor: 6.556

2.  Consistent Spatial-Temporal Longitudinal Atlas Construction for Developing Infant Brains.

Authors:  Yuyao Zhang; Feng Shi; Guorong Wu; Li Wang; Pew-Thian Yap; Dinggang Shen
Journal:  IEEE Trans Med Imaging       Date:  2016-07-07       Impact factor: 10.048

3.  Network-constrained regularization and variable selection for analysis of genomic data.

Authors:  Caiyan Li; Hongzhe Li
Journal:  Bioinformatics       Date:  2008-03-01       Impact factor: 6.937

4.  NTU-90: a high angular resolution brain atlas constructed by q-space diffeomorphic reconstruction.

Authors:  Fang-Cheng Yeh; Wen-Yih Isaac Tseng
Journal:  Neuroimage       Date:  2011-06-16       Impact factor: 6.556

5.  Detail-preserving construction of neonatal brain atlases in space-frequency domain.

Authors:  Yuyao Zhang; Feng Shi; Pew-Thian Yap; Dinggang Shen
Journal:  Hum Brain Mapp       Date:  2016-03-14       Impact factor: 5.038

Review 6.  Diffusion tensor imaging for understanding brain development in early life.

Authors:  Anqi Qiu; Susumu Mori; Michael I Miller
Journal:  Annu Rev Psychol       Date:  2015-01-03       Impact factor: 24.137

7.  Unbiased diffeomorphic atlas construction for computational anatomy.

Authors:  S Joshi; Brad Davis; Matthieu Jomier; Guido Gerig
Journal:  Neuroimage       Date:  2004       Impact factor: 6.556

8.  Construction of a consistent high-definition spatio-temporal atlas of the developing brain using adaptive kernel regression.

Authors:  Ahmed Serag; Paul Aljabar; Gareth Ball; Serena J Counsell; James P Boardman; Mary A Rutherford; A David Edwards; Joseph V Hajnal; Daniel Rueckert
Journal:  Neuroimage       Date:  2011-10-01       Impact factor: 6.556

Review 9.  FSL.

Authors:  Mark Jenkinson; Christian F Beckmann; Timothy E J Behrens; Mark W Woolrich; Stephen M Smith
Journal:  Neuroimage       Date:  2011-09-16       Impact factor: 6.556

10.  Improving Estimation of Fiber Orientations in Diffusion MRI Using Inter-Subject Information Sharing.

Authors:  Geng Chen; Pei Zhang; Ke Li; Chong-Yaw Wee; Yafeng Wu; Dinggang Shen; Pew-Thian Yap
Journal:  Sci Rep       Date:  2016-11-28       Impact factor: 4.379

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  6 in total

1.  Hierarchical geodesic modeling on the diffusion orientation distribution function for longitudinal DW-MRI analysis.

Authors:  Heejong Kim; Sungmin Hong; Martin Styner; Joseph Piven; Kelly Botteron; Guido Gerig
Journal:  Med Image Comput Comput Assist Interv       Date:  2020-09-29

Review 2.  Computational neuroanatomy of baby brains: A review.

Authors:  Gang Li; Li Wang; Pew-Thian Yap; Fan Wang; Zhengwang Wu; Yu Meng; Pei Dong; Jaeil Kim; Feng Shi; Islem Rekik; Weili Lin; Dinggang Shen
Journal:  Neuroimage       Date:  2018-03-21       Impact factor: 6.556

3.  XQ-SR: Joint x-q space super-resolution with application to infant diffusion MRI.

Authors:  Geng Chen; Bin Dong; Yong Zhang; Weili Lin; Dinggang Shen; Pew-Thian Yap
Journal:  Med Image Anal       Date:  2019-06-22       Impact factor: 8.545

4.  Noise reduction in diffusion MRI using non-local self-similar information in joint x-q space.

Authors:  Geng Chen; Yafeng Wu; Dinggang Shen; Pew-Thian Yap
Journal:  Med Image Anal       Date:  2019-01-21       Impact factor: 13.828

5.  Angular Upsampling in Infant Diffusion MRI Using Neighborhood Matching in x-q Space.

Authors:  Geng Chen; Bin Dong; Yong Zhang; Weili Lin; Dinggang Shen; Pew-Thian Yap
Journal:  Front Neuroinform       Date:  2018-09-07       Impact factor: 4.081

6.  A framework for multi-component analysis of diffusion MRI data over the neonatal period.

Authors:  Maximilian Pietsch; Daan Christiaens; Jana Hutter; Lucilio Cordero-Grande; Anthony N Price; Emer Hughes; A David Edwards; Joseph V Hajnal; Serena J Counsell; J-Donald Tournier
Journal:  Neuroimage       Date:  2018-11-02       Impact factor: 6.556

  6 in total

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