| Literature DB >> 29565837 |
Qing Huang1, Yi Xiang1.
Abstract
BACKGROUND Increasing evidence shows that polymorphisms in a number of genes can influence age-related macular degeneration (AMD) risk. This study aimed to investigate the association of CX3CR1 839C/T, CX3CR1 745G/A, PLEKHA1 958A/G, VEGFA +674C/T, and VEGFA +936C/T polymorphisms with AMD risk among Chinese. MATERIAL AND METHODS The polymorphisms were genotyped on 827 AMD patients and 827 controls, and the odds ratios (ORs) were calculated under allele, additive, recessive, and dominant genetic models. Logistic regression analysis was performed to control for potential confounders (age, sex, and smoking status). RESULTS We showed that all the 5 polymorphisms showed a significant association with AMD risk under the additive model (for homozygous mutant genotype) and at least 1 other genetic model, both before and after adjustment for the potential confounders. PLEKHA1 958A/G polymorphism was associated with a decreased AMD risk (additive model: aOR=0.722, 95% CI=0.450-0.979, P=0.019; allele model: aOR=0.883, 95% CI=0.736-0.992, P=0.014), while all other polymorphisms were associated with an increased AMD risk (CX3CR1 839C/T, additive model: aOR=2.682, 95% CI=1.119-5.709, P=0.022, recessive model: aOR=2.729, 95% CI=1.141-6.048, P=0.010; CX3CR1 745G/A, additive model: aOR=2.614, 95% CI=1.231-6.012, P=0.020, recessive model: aOR=2.340, 95% CI=1.227-5.993, P=0.011; VEGFA +674C/T, additive model: aOR=1.601, 95% CI=1.253-2.179, P<0.001, dominant model: aOR=1.287, 95% CI=1.058-1.570, P<0.001, allele model: OR=1.220, 95% CI=1.118-1.427, P<0.001; VEGFA +936C/T, additive model: aOR=1.509, 95% CI=1.105-2.311, P<0.001, recessive model: aOR=1.432, 95% CI=1.027-2.192, P=0.009, dominant model: aOR=1.207, 95% CI=1.031-1.514, P0.001, allele model: aOR=1.216, 95% CI=1.062-1.408, P<0.001). CONCLUSIONS We conclude that the 5 polymorphisms could serve as biomarkers for AMD susceptibility.Entities:
Mesh:
Substances:
Year: 2018 PMID: 29565837 PMCID: PMC5877204 DOI: 10.12659/msm.906298
Source DB: PubMed Journal: Med Sci Monit ISSN: 1234-1010
Methods, primer sequences and band sizes obtained for genotyping of the polymorphisms.
| Polymorphism | Genotyping method | Primer sequences (5′→3′) | Band size (bp) |
|---|---|---|---|
| CX3CR1 839C/T (Thr280Met) and CX3CR1 745G/A (Val249Ile) | Direct sequencing | Primer 1: CCG AGG TCC TTC AGG AAA TCT | 588 |
| Primer 2: TCA GCA TCA GGT TCA GGA ACA C | |||
| PLEKHA1 958A/G (Thr320Ala) | Direct sequencing | Primer 1: GGT CAT GAG TGA CTG ACC GT | 339 |
| Primer 2: GCT CGC ATC GTC CAA GTC TA | |||
| VEGFA +674C/T | ARMS-PCR | Forward primer 1 (C allele): AAC CGC CCC TCC TGT GCC | 118 |
| Forward primer 2 (T allele): AAC CGC CCC TCC TGT GCT | |||
| Common reverse primer: CCT GCC TTC CCC CTG ACA | |||
| VEGFA +936C/T | PCR-RFLP (cleaved with NlaIII restriction enzyme) | Primer 1: AAG GAA GAG GAG ACT CTG CGC AGA GC | 208 |
| Primer 2: TAA ATG TAT GTA TGT GGG TGG GTG TGT CTA CAG G |
Following restriction enzyme cutting, the PCR product of the mutant VEGFA +936 T allele was cleaved into two fragments of 122 and 86 bp.
Description of cases and controls.
| Cases | Control | |
|---|---|---|
| Total subject | 827 | 827 |
| Age | ||
| Range | 62–94 | 70–89 |
| Mean | 77.5 | 79.8 |
| Sex | ||
| Male | 489 (59.1%) | 489 (59.1%) |
| Female | 338 (40.9%) | 338 (40.9%) |
| Smoking status | ||
| Ever smoker | 294 (35.6%) | 216 (26.1%) |
| Never smoker | 533 (64.4%) | 611 (73.9%) |
| Genotyping success rate | 100% | 100% |
Association of the polymorphisms with AMD risk.
| Cases | Controls | OR | 95% CI | P | Adjusted OR | 95% CI | P | |
|---|---|---|---|---|---|---|---|---|
| CX3CR1 839C/T (Thr280Met) | ||||||||
| Genotype frequency | ||||||||
| CC | 648 (78.3%) | 655 (79.2%) | Reference | – | – | Reference | – | – |
| CT (additive model) | 162 (19.6%) | 166 (20.1%) | 0.986 | 0.774–1.257 | 0.912 | 0.986 | 0.781–1.183 | 0.793 |
| TT (additive model) | 17 (2.1%) | 6 (0.7%) | 2.864 | 1.122–7.310 | 0.028* | 2.682 | 1.119–5.709 | 0.022* |
| TT | – | – | 2.868 | 1.125–7.312 | 0.027* | 2.729 | 1.141–6.048 | 0.010* |
| TT+CT | – | – | 1.058 | 0.836–1.339 | 0.640 | 1.033 | 0.867–1.175 | 0.493 |
| Allele frequency | ||||||||
| C | 1458 (88.1%) | 1476 (89.2%) | Reference | – | – | Reference | – | – |
| T | 196 (11.9%) | 178 (10.8%) | 1.115 | 0.899–1.383 | 0.323 | 1.097 | 0.912–1.312 | 0.239 |
| CX3CR1 745G/A (Val249Ile) | ||||||||
| Genotype frequency | ||||||||
| GG | 611 (73.88%) | 631 (76.30%) | Reference | – | – | Reference | – | – |
| GA (additive model) | 194 (23.46%) | 188 (22.73%) | 1.066 | 0.847–1.340 | 0.587 | 1.066 | 0.866–1.319 | 0.471 |
| AA (additive model) | 22 (2.66%) | 8 (0.97%) | 2.840 | 1.255–6.428 | 0.012* | 2.614 | 1.231–6.012 | 0.020* |
| AA | – | – | 2.798 | 1.238–6.321 | 0.013* | 2.340 | 1.227–5.993 | 0.011* |
| AA+GA | – | – | 1.138 | 0.911–1.423 | 0.256 | 1.112 | 0.917–1.681 | 0.249 |
| Allele frequency | ||||||||
| G | 1416 (85.6%) | 1450 (87.7%) | Reference | – | – | Reference | – | – |
| A | 238 (14.4%) | 204 (12.3%) | 1.195 | 0.977–1.460 | 0.083 | 1.129 | 0.968–1.327 | 0.062 |
| PLEKHA1 958A/G (Thr320Ala) | ||||||||
| Genotype frequency | ||||||||
| AA | 466 (56.35%) | 429 (51.87%) | Reference | – | – | Reference | – | – |
| AG (additive model) | 313 (37.85%) | 331 (40.02%) | 0.871 | 0.711–1.066 | 0.180 | 0.902 | 0.732–1.041 | 0.219 |
| GG (additive model) | 48 (5.80%) | 67 (8.10%) | 0.660 | 0.445–0.977 | 0.038* | 0.722 | 0.450–0.979 | 0.019* |
| GG | – | – | 0.699 | 0.476–1.026 | 0.067 | 0.708 | 0.503–1.018 | 0.083 |
| GG+AG | – | – | 0.835 | 0.688–1.013 | 0.068 | 0.916 | 0.716–1.009 | 0.109 |
| Allele frequency | ||||||||
| A | 1245 (75.3%) | 1189 (71.9%) | Reference | – | – | Reference | – | – |
| G | 409 (24.7%) | 465 (28.1%) | 0.840 | 0.720–0.981 | 0.027* | 0.883 | 0.763–0.992 | 0.014* |
| VEGFA +674C/T | ||||||||
| Genotype frequency | ||||||||
| CC | 254 (30.71%) | 307 (37.12%) | Reference | – | – | Reference | – | – |
| CT (additive model) | 392 (47.40%) | 389 (47.04%) | 1.218 | 0.980–1.514 | 0.076 | 1.195 | 0.991–1.478 | 0.101 |
| TT (additive model) | 181 (21.89%) | 131 (15.84%) | 1.670 | 1.263–2.209 | <0.001* | 1.601 | 1.253–2.179 | <0.001* |
| TT | – | – | 0.847 | 0.655–1.096 | 0.206 | 0.868 | 0.692–1.079 | 0.302 |
| TT+CT | – | – | 1.332 | 1.086–1.634 | 0.006* | 1.287 | 1.058–1.570 | <0.001* |
| Allele frequency | ||||||||
| C | 900 (54.4%) | 1003 (60.6%) | Reference | – | – | Reference | – | – |
| T | 754 (45.6%) | 651 (39.4%) | 1.291 | 1.124–1.482 | <0.001* | 1.220 | 1.118–1.427 | <0.001* |
| VEGFA +936C/T | ||||||||
| Genotype frequency | ||||||||
| CC | 456 (55.14%) | 505 (61.06%) | Reference | – | – | Reference | – | – |
| CT (additive model) | 299 (36.15%) | 273 (33.01%) | 1.213 | 0.986–1.492 | 0.068 | 1.185 | 0.988–1.442 | 0.103 |
| TT (additive model) | 72 (8.71%) | 49 (5.93%) | 1.627 | 1.108–2.390 | 0.013* | 1.509 | 1.105–2.311 | <0.001* |
| TT | – | – | 1.514 | 1.039–2.207 | 0.031* | 1.432 | 1.027–2.192 | 0.009* |
| TT+CT | – | – | 1.276 | 1.049–1.552 | 0.015* | 1.207 | 1.031–1.514 | <0.001* |
| Allele frequency | ||||||||
| C | 1211 (73.2%) | 1283 (77.6%) | Reference | – | – | Reference | – | – |
| T | 443 (26.8%) | 371 (22.4%) | 1.265 | 1.079–1.483 | 0.004* | 1.216 | 1.062–1.408 | <0.001* |
Adjusted OR – adjusted for age, sex, smoking status.
Deviation from Hardy-Weinberg equilibrium.
| Polymorphism | HWE P-value |
|---|---|
| 0.195 | |
| 0.141 | |
| 0.778 | |
| 0.647 | |
| 0.140 |