| Literature DB >> 29559003 |
Maryam Dendana1, Wael Bahia1,2, Ramzi R Finan3, Mariam Al-Mutawa4, Wassim Y Almawi5,6.
Abstract
BACKGROUND: This study addresses whether the association of adiponectin gene (ADIPOQ) variants with idiopathic recurrent pregnancy loss (RPL) is influenced by obesity.Entities:
Keywords: Adiponectin; Haplotypes; Idiopathic recurrent miscarriage; Real-time PCR
Mesh:
Substances:
Year: 2018 PMID: 29559003 PMCID: PMC5861597 DOI: 10.1186/s12967-018-1453-3
Source DB: PubMed Journal: J Transl Med ISSN: 1479-5876 Impact factor: 5.531
ADIPOQ SNPs analyzed in RPL cases and control women
| SNP | Assay ID | Position | HWE P | Alleles | Casesa | Controlsa | χ2 |
| aORb (95% CI) | Power |
|---|---|---|---|---|---|---|---|---|---|---|
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| C_27867233_10 | 186551682 | 0.209 | T:C |
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| rs16861194 | C_33187775_10 | 186559425 | 0.325 | A:G | 0.098 | 0.079 | 0.979 | 0.322 | 1.25 (0.80–1.95) | 63 |
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| C_33187774_10 | 186559460 | 1.000 | G:A |
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| C_2412786_10 | 186559474 | 0.213 | C:G |
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| C_2412785_10 | 186560782 | 0.348 | G:A |
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| C_33187764_10 | 186563114 | 0.205 | C:A |
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| rs822396 | C_2910316_10 | 186566877 | 0.337 | A:G | 0.139 | 0.157 | 0.582 | 0.445 | 0.92 (0.64–1.33) | 42 |
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| C_42772949_10 | 186568785 | 0.303 | A:T |
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| rs2241766 | C_26426077_10 | 186570892 | 0.578 | T:G | 0.156 | 0.193 | 2.166 | 0.141 | 0.80 (0.57–1.12) | 62 |
| rs1501299 | C_7497299_10 | 186571123 | 0.212 | C:A | 0.324 | 0.307 | 0.343 | 0.558 | 1.09 (0.83–1.43) | 54 |
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| C_26426076_10 | 186571196 | 1.000 | A:G |
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| rs3774261 | C_27479710_10 | 186571559 | 0.303 | G:A | 0.462 | 0.495 | 0.989 | 0.320 | 0.87 (0.67–1.14) | 61 |
| rs6773957 | C_1486294_10 | 186573705 | 0.285 | G:A | 0.506 | 0.475 | 0.951 | 0.330 | 1.13 (0.88–1.46) | 63 |
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| C_1486290_10 | 186575392 | 0.277 | G:C |
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Italicface indicates statistical significance
aMAF frequency
baOR = adjusted OR; variables that were controlled for were BMI, menarche, systolic and diastolic blood pressure
Demographics and clinical characteristics of cases and controls
| Casesa | Controlsa |
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|---|---|---|---|
| Age at inclusion in studyc | 31.6 ± 5.4 | 31.6 ± 4.9 | 0.94 |
| Body-mass index (kg/m2)c | 26.3 ± 5.4 | 25.2 ± 4.3 | 0.004 |
| Obesity [n (%)]d | 58 (19.6) | 37 (12.1) | 0.02 |
| Smokers [n (%)]d | 30 (10.1) | 32 (10.8) | 0.69 |
| Systolic blood pressure (mmHg)c | 114.2 ± 11.9 | 120.2 ± 17.0 | < 0.001 |
| Diastolic blood pressure (mmHg)c | 72.0 ± 8.4 | 75.8 ± 9.1 | < 0.001 |
| Glucose (mmol/L)c | 5.1 ± 0.9 | 5.2 ± 0.7 | 0.55 |
| Menarche (years)c | 12.2 ± 1.1 | 12.8 ± 1.0 | < 0.001 |
| Number of pregnanciesc | 4.2 ± 1.5 | 4.0 ± 1.1 | 0.11 |
| Number of childrenc | 0.8 ± 1.1 | 4.0 ± 1.1 | < 0.001 |
| Miscarriagesc | 3.6 ± 1.0 | 0.0 ± 0.1 | < 0.001 |
aA total of 308 RPL cases and 310 control women were included
bStudent’s t-test (continuous variables), Pearson’s χ2 test (categorical variables)
cMean ± SD
dPercent of total within each group/subgroup
ADIPOQ genotype frequencies
| SNP | 1/1a | 1/2a | 2/2a | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Cases | Controls |
| Cases | Controls | OR (95% CI) | Cases | Controls | OR (95% CI) | |
| rs4632532 | 141 (0.46)c | 171 (0.55) | 0.042 | 126 (0.41) | 114 (0.37) | 1.33 (0.92–1.93) |
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| rs1063539 | 229 (0.74) | 199 (0.64) | 0.060 |
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| 11 (0.04) | 16 (0.05) | 0.57 (0.23–1.44) |
| rs17300539 | 256 (0.83) | 283 (0.91) | 0.027 |
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| 1 (0.003) | 1 (0.003) | 1.08 (0.07–17.41) |
| rs16861209 | 229 (0.74) | 259 (0.84) | 0.032 |
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| 10 (0.03) | 3 (0.01) | 3.87 (0.79–18.88) |
| rs266729 | 187 (0.61) | 208 (0.67) | 0.079 | 88 (0.29) | 86 (0.28) | 1.14 (0.74–1.77) |
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| rs822396 | 233 (0.76) | 223 (0.72) | 0.650 | 66 (0.21) | 78 (0.25) | 0.81 (0.53–1.25) | 9 (0.03) | 9 (0.03) | 0.96 (0.33–2.80) |
| rs1501299 | 144 (0.47) | 161 (0.52) | 0.511 | 127 (0.41) | 115 (0.37) | 1.23 (0.85–1.79) | 37 (0.12) | 34 (0.11) | 1.23 (0.69–2.17) |
| rs182052 | 132 (0.43) | 174 (0.56) | 0.001 | 128 (0.42) | 119 (0.38) | 1.43 (0.94–2.17) |
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| rs7649121 | 222 (0.72) | 244 (0.79) | 0.190 | 57 (0.19) | 49 (0.16) | 1.30 (0.80–2.10) | 29 (0.09) | 17 (0.05) | 1.76 (0.86–3.58) |
| rs2241766 | 219 (0.71) | 195 (0.63) | 0.043 | 82 (0.27) | 96 (0.31) | 0.77 (0.52–1.13) |
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| rs3774261 | 92 (0.30) | 93 (0.30) | 0.212 | 148 (0.48) | 127 (0.41) | 1.19 (0.76–1.86) | 68 (0.22) | 90 (0.29) | 0.78 (0.47–1.30) |
| rs16861194 | 257 (0.83) | 264 (0.85) | 0.687 | 46 (0.15) | 44 (0.14) | 1.09 (0.67–1.76) | 5 (0.02) | 2 (0.01) | 2.01 (0.36–11.08) |
| rs6773957 | 80 (0.26) | 88 (0.28) | 0.790 | 144 (0.47) | 144 (0.46) | 1.11 (0.73–1.69) | 84 (0.27) | 78 (0.25) | 1.18 (0.73–1.90) |
| rs2241767 | 223 (0.72) | 200 (0.65) | 0.054 |
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| 18 (0.06) | 14 (0.05) | 1.14 (0.51–2.56) |
Italicface indicates statistical significance
aGenotypes were coded as per “1” = major allele, “2” = minor allele
b2-way ANOVA
cNumber of subjects (frequency)
Association of ADIPOQ variants with RPL in obese vs. non-obese cases and control women
| SNP | Non-obese | Obese | ||||||
|---|---|---|---|---|---|---|---|---|
| Controla | Casea |
| OR (95% CI) | Controla | Casea |
| OR (95% CI) | |
| rs4632532 | 28.05 | 33.33 | 0.093 | 1.28 (0.96–1.71) |
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| rs1063539 |
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| 23.08 | 15.85 | 0.296 | 0.63 (0.26–1.51) |
| rs17300539 | 03.72 | 06.91 | 0.053 | 1.92 (0.98–3.75) | 09.26 | 17.11 | 0.202 | 2.02 (0.68–6.06) |
| rs16861209 |
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| 13.46 | 23.68 | 0.152 | 1.99 (0.77–5.19) |
| rs266729 | 19.17 | 24.00 | 0.117 | 1.33 (0.93–1.91) | 16.67 | 30.26 | 0.125 | 2.17 (0.79–5.92) |
| rs822396 | 16.09 | 14.89 | 0.647 | 0.91 (0.62–1.35) | 13.79 | 08.75 | 0.348 | 0.60 (0.20–1.76) |
| rs1501299 | 29.01 | 31.86 | 0.371 | 1.14 (.085–1.54) | 32.14 | 35.56 | 0.671 | 1.16 (0.57–2.36) |
| rs182052 |
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| rs7649121 |
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| rs2241766 | 20.62 | 16.09 | 0.093 | 0.74 (0.52–1.05) |
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| rs3774261 | 32.08 | 45.45 | 0.386 | 0.88 (0.65–1.18) | 46.00 | 48.68 | 0.764 | 1.11 (0.54–2.28) |
| rs16861194 | 08.63 | 09.05 | 0.823 | 1.05 (0.66–1.68) | 00.00 | 07.45 | – | N/A |
| rs6773957 | 49.53 | 51.50 | 0.571 | 1.08 (0.82–1.42) | 41.38 | 46.94 | 0.498 | 1.25 (0.65–2.42) |
| rs2241767 | 19.82 | 15.79 | 0.125 | 0.76 (0.53–1.08) | 24.14 | 19.39 | 0.484 | 0.76 (0.35–1.65) |
Italicface indicates statistical significance
aPercent minor allele carriers
Fig. 1Haploview plot of ADIPOQ SNP analyzed. The relative positions of ADIPOQ SNPs (Build 37.3) are displayed, along with the basic gene structure, above the Haploview diagram. The relative LD between pairs of ADIPOQ SNPs is color-indicated. This was based on D’, i.e. normalized linkage disequilibrium measure or D divided by the theoretical maximum for the observed allele frequencies, multiplied by 100. Values close to zero indicate no LD, while values approaching 100 indicate full LD. The red colored square represents varying degrees of LD < 1 and LOD (logarithm of odds) > 2 scores; darker shades indicating stronger LD
Haplotype frequencies across 14 ADIPOQ SNPs analyzeda
| Haplotypeb | Frequency | Case:control frequency | χ2 |
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| Block 1 |
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| 7.6 × 10−5 |
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| T A G C G C | 0.086 | 0.082; 0.091 | 0.19 | 0.661 | |
| 0.068 | 0.076; 0.059 | 1.01 | 0.314 | ||
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| 0.048 | 0.053; 0.043 | 0.52 | 0.471 | ||
| T A G C G | 0.046 | 0.054; 0.038 | 1.23 | 0.268 | |
| 0.042 | 0.051; 0.032 | 2.14 | 0.144 | ||
| T A G C G C A | 0.038 | 0.037; 0.040 | 0.04 | 0.837 | |
| Block 2 | T C A G | 0.445 | 0.475; 0.414 | 3.71 | 0.054 |
| T | 0.291 | 0.295; 0.287 | 0.06 | 0.801 | |
| 0.125 | 0.119; 0.132 | 0.36 | 0.546 | ||
| T C A | 0.029 | 0.023; 0.035 | 1.40 | 0.236 | |
| 0.021 | 0.015; 0.026 | 1.43 | 0.231 | ||
Italicface indicates statistical significance
aADIPOQ Block 1: rs4632532- rs16861194- rs17300539- rs266729- rs182052- rs16861209- rs822396- rs7649121, Block 2: rs2241766- rs1501299- rs2241767- rs3774261- rs6773957- rs1063539 haplotypes
bUnderlined indicates minor allele