Literature DB >> 29551132

The Species Problem in Virology.

Marc H V Van Regenmortel1.   

Abstract

Virus classification deals with conceptual species classes that have viruses as their members. A virus species cannot be described but can only be defined by listing certain species-defining properties of its member. However, it is not possible to define a virus species by using a single species-defining property. The new 2013 official definition of virus species is not appropriate because it applies equally to virus genera. A nucleotide motif is a chemical part of a viral genome and is not a species-defining property that could be used for establishing new virus species. A virus classification based solely on nucleotide sequences is a classification of viral genomes and not of viruses. The variable distribution of species-defining properties of a polythetic species class is not itself a single common property of all the members of the class, since this would lead to the paradox that every polythetic class is also a monothetic one.
© 2018 Elsevier Inc. All rights reserved.

Keywords:  Linnaean classification hierarchy; Non-Latinized binomial species names; Polythetic class; Viral taxonomy; Virus identification; Virus species

Mesh:

Year:  2017        PMID: 29551132     DOI: 10.1016/bs.aivir.2017.10.008

Source DB:  PubMed          Journal:  Adv Virus Res        ISSN: 0065-3527            Impact factor:   9.937


  5 in total

1.  Strengthening the Interaction of the Virology Community with the International Committee on Taxonomy of Viruses (ICTV) by Linking Virus Names and Their Abbreviations to Virus Species.

Authors:  Charles H Calisher; Thomas Briese; J Rodney Brister; Rémi N Charrel; Ralf Dürrwald; Hideki Ebihara; Charles F Fulhorst; George Fú Gāo; Martin H Groschup; Andrew D Haddow; Timothy H Hyndman; Sandra Junglen; Boris Klempa; Jonas Klingström; Andrew M Kropinski; Mart Krupovic; A Desiree LaBeaud; Piet Maes; Norbert Nowotny; Márcio Roberto Teixeira Nunes; Susan L Payne; Sheli R Radoshitzky; Dennis Rubbenstroth; Sead Sabanadzovic; Takahide Sasaya; Mark D Stenglein; Arvind Varsani; Victoria Wahl; Scott C Weaver; Francisco Murilo Zerbini; Nikos Vasilakis; Jens H Kuhn
Journal:  Syst Biol       Date:  2019-09-01       Impact factor: 15.683

2.  Interpretable detection of novel human viruses from genome sequencing data.

Authors:  Jakub M Bartoszewicz; Anja Seidel; Bernhard Y Renard
Journal:  NAR Genom Bioinform       Date:  2021-02-01

3.  Increasing the number of available ranks in virus taxonomy from five to ten and adopting the Baltimore classes as taxa at the basal rank.

Authors:  Alexander E Gorbalenya
Journal:  Arch Virol       Date:  2018-06-26       Impact factor: 2.574

4.  The species Severe acute respiratory syndrome-related coronavirus: classifying 2019-nCoV and naming it SARS-CoV-2.

Authors: 
Journal:  Nat Microbiol       Date:  2020-03-02       Impact factor: 17.745

Review 5.  Virus classification - where do you draw the line?

Authors:  Peter Simmonds; Pakorn Aiewsakun
Journal:  Arch Virol       Date:  2018-07-24       Impact factor: 2.574

  5 in total

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