Literature DB >> 30597118

Strengthening the Interaction of the Virology Community with the International Committee on Taxonomy of Viruses (ICTV) by Linking Virus Names and Their Abbreviations to Virus Species.

Charles H Calisher1, Thomas Briese2, J Rodney Brister3, Rémi N Charrel4, Ralf Dürrwald5, Hideki Ebihara6, Charles F Fulhorst7, George Fú Gāo8, Martin H Groschup9, Andrew D Haddow10, Timothy H Hyndman11, Sandra Junglen12,13, Boris Klempa14, Jonas Klingström15, Andrew M Kropinski16,17, Mart Krupovic18, A Desiree LaBeaud19, Piet Maes20, Norbert Nowotny21,22, Márcio Roberto Teixeira Nunes23, Susan L Payne24, Sheli R Radoshitzky25, Dennis Rubbenstroth9,26, Sead Sabanadzovic27, Takahide Sasaya28, Mark D Stenglein29, Arvind Varsani30, Victoria Wahl31, Scott C Weaver32, Francisco Murilo Zerbini33, Nikos Vasilakis34, Jens H Kuhn35.   

Abstract

The International Committee on Taxonomy of Viruses (ICTV) is tasked with classifying viruses into taxa (phyla to species) and devising taxon names. Virus names and virus name abbreviations are currently not within the ICTV's official remit and are not regulated by an official entity. Many scientists, medical/veterinary professionals, and regulatory agencies do not address evolutionary questions nor are they concerned with the hierarchical organization of the viral world, and therefore, have limited use for ICTV-devised taxa. Instead, these professionals look to the ICTV as an expert point source that provides the most current taxonomic affiliations of viruses of interests to facilitate document writing. These needs are currently unmet as an ICTV-supported, easily searchable database that includes all published virus names and abbreviations linked to their taxa is not available. In addition, in stark contrast to other biological taxonomic frameworks, virus taxonomy currently permits individual species to have several members. Consequently, confusion emerges among those who are not aware of the difference between taxa and viruses, and because certain well-known viruses cannot be located in ICTV publications or be linked to their species. In addition, the number of duplicate names and abbreviations has increased dramatically in the literature. To solve this conundrum, the ICTV could mandate listing all viruses of established species and all reported unclassified viruses in forthcoming online ICTV Reports and create a searchable webpage using this information. The International Union of Microbiology Societies could also consider changing the mandate of the ICTV to include the nomenclature of all viruses in addition to taxon considerations. With such a mandate expansion, official virus names and virus name abbreviations could be catalogued and virus nomenclature could be standardized. As a result, the ICTV would become an even more useful resource for all stakeholders in virology. Published by Oxford University Press, on behalf of the Society of Systematic Biologists 2019.

Entities:  

Keywords:  (ICTV); Arbovirus; International Committee on Taxonomy of Viruses; classification; nomenclature; species; taxonomy; virus

Mesh:

Year:  2019        PMID: 30597118      PMCID: PMC6701456          DOI: 10.1093/sysbio/syy087

Source DB:  PubMed          Journal:  Syst Biol        ISSN: 1063-5157            Impact factor:   15.683


  25 in total

1.  A new antigenic group of arthropod-borne viruses: the Bunyamwera group.

Authors:  J CASALS; L WHITMAN
Journal:  Am J Trop Med Hyg       Date:  1960-01       Impact factor: 2.345

Review 2.  Clarification and guidance on the proper usage of virus and virus species names.

Authors:  Jens H Kuhn; Peter B Jahrling
Journal:  Arch Virol       Date:  2010-03-04       Impact factor: 2.574

3.  Using the whole-genome sequence to characterize and name human adenoviruses.

Authors:  Donald Seto; James Chodosh; J Rodney Brister; Morris S Jones
Journal:  J Virol       Date:  2011-03-30       Impact factor: 5.103

4.  The taxonomy of viruses should include viruses.

Authors:  Charles H Calisher
Journal:  Arch Virol       Date:  2016-02-25       Impact factor: 2.574

5.  Bunyavirus Taxonomy: Limitations and Misconceptions Associated with the Current ICTV Criteria Used for Species Demarcation.

Authors:  Bradley J Blitvich; Barry J Beaty; Carol D Blair; Aaron C Brault; Gerhard Dobler; Michael A Drebot; Andrew D Haddow; Laura D Kramer; Angelle Desiree LaBeaud; Thomas P Monath; Eric C Mossel; Kenneth Plante; Ann M Powers; Robert B Tesh; Michael J Turell; Nikos Vasilakis; Scott C Weaver
Journal:  Am J Trop Med Hyg       Date:  2018-04-19       Impact factor: 2.345

6.  Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG).

Authors:  Jelle Matthijnssens; Max Ciarlet; Sarah M McDonald; Houssam Attoui; Krisztián Bányai; J Rodney Brister; Javier Buesa; Mathew D Esona; Mary K Estes; Jon R Gentsch; Miren Iturriza-Gómara; Reimar Johne; Carl D Kirkwood; Vito Martella; Peter P C Mertens; Osamu Nakagomi; Viviana Parreño; Mustafizur Rahman; Franco M Ruggeri; Linda J Saif; Norma Santos; Andrej Steyer; Koki Taniguchi; John T Patton; Ulrich Desselberger; Marc Van Ranst
Journal:  Arch Virol       Date:  2011-05-20       Impact factor: 2.574

7.  Possibility and Challenges of Conversion of Current Virus Species Names to Linnaean Binomials.

Authors:  Thomas S Postler; Anna N Clawson; Gaya K Amarasinghe; Christopher F Basler; Sbina Bavari; Mária Benko; Kim R Blasdell; Thomas Briese; Michael J Buchmeier; Alexander Bukreyev; Charles H Calisher; Kartik Chandran; Rémi Charrel; Christopher S Clegg; Peter L Collins; De La Torre Juan Carlos; Joseph L Derisi; Ralf G Dietzgen; Olga Dolnik; Ralf Dürrwald; John M Dye; Andrew J Easton; Sébastian Emonet; Pierre Formenty; Ron A M Fouchier; Elodie Ghedin; Jean-Paul Gonzalez; Balázs Harrach; Roger Hewson; Masayuki Horie; Dàohóng Jiang; Gary Kobinger; Hideki Kondo; Andrew M Kropinski; Mart Krupovic; Gael Kurath; Robert A Lamb; Eric M Leroy; Igor S Lukashevich; Andrea Maisner; Arcady R Mushegian; Sergey V Netesov; Norbert Nowotny; Jean L Patterson; Susan L Payne; Janusz T PaWeska; Clarence J Peters; Sheli R Radoshitzky; Bertus K Rima; Victor Romanowski; Dennis Rubbenstroth; Sead Sabanadzovic; Hélène Sanfaçon; Maria S Salvato; Martin Schwemmle; Sophie J Smither; Mark D Stenglein; David M Stone; Ayato Takada; Robert B Tesh; Keizo Tomonaga; Noël Tordo; Jonathan S Towner; Nikos Vasilakis; Viktor E Volchkov; Victoria Wahl-Jensen; Peter J Walker; Lin-Fa Wang; Arvind Varsani; Anna E Whitfield; F Murilo Zerbini; Jens H Kuhn
Journal:  Syst Biol       Date:  2017-05-01       Impact factor: 15.683

8.  Virus nomenclature below the species level: a standardized nomenclature for natural variants of viruses assigned to the family Filoviridae.

Authors:  Jens H Kuhn; Yiming Bao; Sina Bavari; Stephan Becker; Steven Bradfute; J Rodney Brister; Alexander A Bukreyev; Kartik Chandran; Robert A Davey; Olga Dolnik; John M Dye; Sven Enterlein; Lisa E Hensley; Anna N Honko; Peter B Jahrling; Karl M Johnson; Gary Kobinger; Eric M Leroy; Mark S Lever; Elke Mühlberger; Sergey V Netesov; Gene G Olinger; Gustavo Palacios; Jean L Patterson; Janusz T Paweska; Louise Pitt; Sheli R Radoshitzky; Erica Ollmann Saphire; Sophie J Smither; Robert Swanepoel; Jonathan S Towner; Guido van der Groen; Viktor E Volchkov; Victoria Wahl-Jensen; Travis K Warren; Manfred Weidmann; Stuart T Nichol
Journal:  Arch Virol       Date:  2012-09-23       Impact factor: 2.574

9.  Filovirus RefSeq entries: evaluation and selection of filovirus type variants, type sequences, and names.

Authors:  Jens H Kuhn; Kristian G Andersen; Yīmíng Bào; Sina Bavari; Stephan Becker; Richard S Bennett; Nicholas H Bergman; Olga Blinkova; Steven Bradfute; J Rodney Brister; Alexander Bukreyev; Kartik Chandran; Alexander A Chepurnov; Robert A Davey; Ralf G Dietzgen; Norman A Doggett; Olga Dolnik; John M Dye; Sven Enterlein; Paul W Fenimore; Pierre Formenty; Alexander N Freiberg; Robert F Garry; Nicole L Garza; Stephen K Gire; Jean-Paul Gonzalez; Anthony Griffiths; Christian T Happi; Lisa E Hensley; Andrew S Herbert; Michael C Hevey; Thomas Hoenen; Anna N Honko; Georgy M Ignatyev; Peter B Jahrling; Joshua C Johnson; Karl M Johnson; Jason Kindrachuk; Hans-Dieter Klenk; Gary Kobinger; Tadeusz J Kochel; Matthew G Lackemeyer; Daniel F Lackner; Eric M Leroy; Mark S Lever; Elke Mühlberger; Sergey V Netesov; Gene G Olinger; Sunday A Omilabu; Gustavo Palacios; Rekha G Panchal; Daniel J Park; Jean L Patterson; Janusz T Paweska; Clarence J Peters; James Pettitt; Louise Pitt; Sheli R Radoshitzky; Elena I Ryabchikova; Erica Ollmann Saphire; Pardis C Sabeti; Rachel Sealfon; Aleksandr M Shestopalov; Sophie J Smither; Nancy J Sullivan; Robert Swanepoel; Ayato Takada; Jonathan S Towner; Guido van der Groen; Viktor E Volchkov; Valentina A Volchkova; Victoria Wahl-Jensen; Travis K Warren; Kelly L Warfield; Manfred Weidmann; Stuart T Nichol
Journal:  Viruses       Date:  2014-09-26       Impact factor: 5.048

10.  Defining viral species: making taxonomy useful.

Authors:  A Townsend Peterson
Journal:  Virol J       Date:  2014-07-23       Impact factor: 4.099

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Authors:  Kirk Osmond Douglas; Thelma Alafia Samuels; Rommel Iheozor-Ejiofor; Olli Vapalahti; Tarja Sironen; Marquita Gittens-St Hilaire
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