Literature DB >> 29550490

Loquacious-PD removes phosphate inhibition of Dicer-2 processing of hairpin RNAs into siRNAs.

Ryuya Fukunaga1.   

Abstract

Drosophila Dicer-2 processes RNA substrates into short interfering RNAs (siRNAs). Loquacious-PD (Loqs-PD), a dsRNA-binding protein that associates with Dicer-2, is required for processing of a subset of RNA substrates including hairpin RNAs into siRNAs. Inorganic phosphate-a small molecule present in all cell types-inhibits Dicer-2 from processing precursor of microRNAs (pre-miRNAs), which are processed by Dicer-1. Whether or how Loqs-PD modulates the inhibitory effect of inorganic phosphate on Dicer-2 processing of RNA substrates is unknown. To address this question, I performed in vitro hairpin RNA processing assay with Dicer-2 in the presence or absence of Loqs-PD and/or inorganic phosphate. I found that inorganic phosphate inhibits Dicer-2 alone, but not Dicer-2 + Loqs-PD, from processing blunt-end hairpin RNAs into siRNAs. Thus, Loqs-PD removes the inhibitory effect of inorganic phosphate on Dicer-2 processing of blunt-end hairpin RNAs, allowing siRNA production in the presence of inorganic phosphate.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Dicer-2; Inorganic phosphate; Loquacious; RNA silencing; dsRNA; siRNA

Mesh:

Substances:

Year:  2018        PMID: 29550490      PMCID: PMC5881606          DOI: 10.1016/j.bbrc.2018.03.108

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN: 0006-291X            Impact factor:   3.575


  26 in total

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Journal:  Plant Cell Physiol       Date:  2017-03-01       Impact factor: 4.927

3.  Arabidopsis double-stranded RNA binding protein DRB3 participates in methylation-mediated defense against geminiviruses.

Authors:  Priya Raja; Jamie N Jackel; Sizhun Li; Isaac M Heard; David M Bisaro
Journal:  J Virol       Date:  2013-12-18       Impact factor: 5.103

4.  Phosphate and R2D2 restrict the substrate specificity of Dicer-2, an ATP-driven ribonuclease.

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Journal:  Mol Cell       Date:  2011-03-17       Impact factor: 17.970

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8.  Loqs-PD and R2D2 define independent pathways for RISC generation in Drosophila.

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Journal:  Nucleic Acids Res       Date:  2011-01-17       Impact factor: 16.971

9.  Distinct substrate specificities of Arabidopsis DCL3 and DCL4.

Authors:  Hideaki Nagano; Akihito Fukudome; Akihiro Hiraguri; Hiromitsu Moriyama; Toshiyuki Fukuhara
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10.  Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells.

Authors:  Megha Ghildiyal; Hervé Seitz; Michael D Horwich; Chengjian Li; Tingting Du; Soohyun Lee; Jia Xu; Ellen L W Kittler; Maria L Zapp; Zhiping Weng; Phillip D Zamore
Journal:  Science       Date:  2008-04-10       Impact factor: 47.728

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  4 in total

1.  Drosophila Regnase-1 RNase is required for mRNA and miRNA profile remodelling during larva-to-adult metamorphosis.

Authors:  Li Zhu; Susan E Liao; Ryuya Fukunaga
Journal:  RNA Biol       Date:  2019-06-23       Impact factor: 4.652

2.  An RNA-binding protein Blanks plays important roles in defining small RNA and mRNA profiles in Drosophila testes.

Authors:  Susan E Liao; Yiwei Ai; Ryuya Fukunaga
Journal:  Heliyon       Date:  2018-07-25

3.  RNA methyltransferase BCDIN3D is crucial for female fertility and miRNA and mRNA profiles in Drosophila ovaries.

Authors:  Li Zhu; Susan E Liao; Yiwei Ai; Ryuya Fukunaga
Journal:  PLoS One       Date:  2019-05-30       Impact factor: 3.240

4.  LOTUS domain protein MARF1 binds CCR4-NOT deadenylase complex to post-transcriptionally regulate gene expression in oocytes.

Authors:  Li Zhu; Suresh K Kandasamy; Susan E Liao; Ryuya Fukunaga
Journal:  Nat Commun       Date:  2018-10-02       Impact factor: 14.919

  4 in total

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