| Literature DB >> 29540180 |
Jiaqiang Ren1, Dawn Ward1, Steven Chen1, Katherine Tran1, Ping Jin1, Marianna Sabatino1, Pamela G Robey2, David F Stroncek3.
Abstract
BACKGROUND: Bone marrow stromal cells (BMSCs) have classically been cultured in media supplemented with fetal bovine serum (FBS). As an alternative to FBS, pooled solvent detergent apheresis platelets, HPGF-C18, was evaluated for BMSC culture.Entities:
Keywords: Bone marrow stromal cells; Fetal bovine serum; Mesenchymal stem cells; Platelet lysate; Potency
Mesh:
Substances:
Year: 2018 PMID: 29540180 PMCID: PMC5853093 DOI: 10.1186/s12967-018-1400-3
Source DB: PubMed Journal: J Transl Med ISSN: 1479-5876 Impact factor: 5.531
Fig. 1Proliferation of BMSCs in HPGF-C18 and FBS. Cryopreserved passage 2 BMSCs from 3 healthy subjects were thawed and cultured for 2 additional passages in αMEM supplemented with 5, 10, 15 and 20% HPGF-C18 and 20% FBS. The cumulative population doublings (PDs) at passages 3 and 4 are shown in a. The mean (± 1 SD) cumulative PDs normalized by total number of days in culture at passage 4 for each culture condition is show in b. Primary cultures of marrow aspirates cultured in αMEM supplemented with 10% HPGF-C18 showed irregular spacing and piling up of BMSCs while primary cultures of the same marrow aspirated cultured in 20% FBS formed more uniform monolayers (c). BMSCs from marrow aspirates of 5 healthy subjects were cultured for 4 passages in 10% HPGF-C18 and 20% FBS. The cumulative population doubling for BMSCs grown in 10% HPGF-C18 are shown in green and of 20% FBS in red. Each panel represents BMSCs isolated and expanded from one healthy subject. Each circle represents one BMSC passage (d)
Comparison of primary BMSCs cultured with 10% HPGF-C18 and 20% FBS from marrow aspirates of 5 healthy subjects
| Media supplement | Number of nucleated cell from marrow | Total number of BMSCs harvested | Days in culture | CFE per 1 × 105 cells | |
|---|---|---|---|---|---|
| BM01 | 10% HPGF-C18 | 10.0 × 106 | 1.20 × 105 | 14 | 2 |
| 20% FBS | 10.0 × 106 | 1.14 × 106 | 14 | 1 | |
| BM03 | 10% HPGF-C18 | 6.10 × 106 | 3.00 × 105 | 12 | 4a |
| 20% FBS | 6.10 × 106 | 4.20 × 105 | 12 | 3 | |
| BM04 | 10% HPGF-C18 | 55.2 × 106 | 7.8 × 105 | 13 | 5a |
| 20% FBS | 55.2 × 106 | 5.94 × 106 | 13 | 4 | |
| BM06b | 10% HPGF-C18 | 5.8 × 106 | 2.2 × 106 | 12 | 9a |
| 20% FBS | 5.8 × 106 | 3.78 × 106 | 12 | 11 | |
| BM07b | 10% HPGF-C18 | 21.7 × 106 | 2.4 × 106 | 12 | 30a |
| 20% FBS | 21.7 × 106 | 1.14 × 106 | 12 | 25 |
aColonies with atypical features
bParticles were allowed to settle for the preparation of HPGF-C18
The expression of surface markers by flow cytometry
| Donor | Supplement | CD90 | CD73 | CD105 | CD146 | CD166 | CD106 | CD11b | CD34 | CD45 | CD14 | HLA-DR | CD19 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BM01 | 10% HPGF | 99.5 | 99.2 | 99.4 | 99.1 | 99.6 | 14.4 | 0.6 | 2.1 | 0.9 | 0.9 | 0.9 | 0.6 |
| 20% FBS | 99.9 | 99.9 | 99.9 | 99.9 | 99.6 | 12.3 | 0.8 | 1.4 | 0.9 | 0.3 | 0.6 | 0.7 | |
| BM03 | 10% HPGF | 97.6 | 97.2 | 97 | 92.1 | 97.3 | 58.8 | 1 | 4 | 1 | 0.4 | 1.2 | 0.7 |
| 20% FBS | 99 | 99 | 98.9 | 98.5 | 98.9 | 18.3 | 1.1 | 1.3 | 1.1 | 0.3 | 1.3 | 1.3 | |
| BM04 | 10% HPGF | 99.3 | 99.2 | 99 | 98.6 | 99.1 | 49.5 | 1 | 5.7 | 1.2 | 1 | 1.2 | 0.9 |
| 20% FBS | 99.9 | 99.9 | 99.9 | 99.8 | 100 | 26.1 | 1.1 | 9.6 | 0.8 | 1 | 15.6 | 0.7 | |
| BM06 | 10% HPGF | 99.5 | 99.4 | 99.3 | 93.8 | 99.5 | 32.6 | 1.5 | 3.7 | 1.2 | 1.4 | 1.6 | 1.2 |
| 20% FBS | 100 | 100 | 100 | 99.4 | 100 | 8.5 | 1.4 | 2.9 | 1.2 | 1 | 1.2 | 1.5 | |
| BM07 | 10% HPGF | 99.3 | 99.2 | 99.3 | 98.8 | 99.3 | 47.5 | 1.2 | 2.1 | 1.3 | 0.9 | 1 | 0.8 |
| 20% FBS | 98.7 | 98.8 | 98.8 | 99 | 99.3 | 31.1 | 1.2 | 3.6 | 1 | 0.1 | 1.1 | 1.3 |
Fig. 2Inhibition of mixed lymphocyte reactions by BMSCs cultured with 10% HPGF-C18 and 20% FBS on the proliferation of mixed lymphocytes. BMSC suppression of mixed lymphocyte reactions was measured by H3-thymdine incorporation methods; the percent suppression was calculated by normalizing the values to the mixed lymphocyte reaction without BMSCs. Two doses of BMSCs were evaluated, 1 × 104 BMSCs per well (a, data for BM06 is missing due to technical issues) and 4 × 104 per well (b). There was no significant difference on their suppressive activity
Fig. 3Concentration of proteins in BMSC culture supernatants. The supernatants of BMSCs cultured in 10% HPGF-C18 or 20% FBS were collected and the concentrations of proteins were measured by SearchLight. The p-values were calculated by paired t-test
Fig. 4Global transcriptome and microRNA analysis of BMSCs cultured in 10% HPGF-C18 and 20% FBS. BMSCs were prepared from marrow aspirates of 5 healthy subjects and were cultured for 4 passages in 10% HPGF-C18 or 20% FBS. Passage 3 and 4 BMSCs from all 5 subjects were analyzed by global gene expression analysis. The results of the principal component analysis (PCA) analysis of the gene expression data are shown, the blue circles represent BMSCs cultured in 10% HPGF-C18 and the red circles BMSCs cultured in 20% FBS (a). Microarray data were analyzed using Gene Set Enrichment Analysis (GSEA) software to identify functionally related groups of genes (gene sets) with statistically significant enrichment. The enrichment plot for interferon gamma response and the 21 genes on the leading edge that are positively correlated with 10% HPGF-C18 (indicated by the blue rectangle) are shown in b. The enrichment plot for epithelial–mesenchymal transition and the 29 genes on the leading edge that are negatively correlated with HPGF-C18 culture (as indicated by the blue rectangle) were shown in c. In both b, c the plot on the left shows the distribution of genes in the set that are positively and negatively correlated with the HPGF-C18 phenotype. The plot on the right shows the relative gene expression (red = high, blue = low) for each gene for the indicated samples. Passage 4 BMCSs were also analyzed by microRNA PCR array, the PCA results on the microRNAs were shown, the blue circles represent BMSCs cultured in 10% HPGF-C18 and the red circles BMSCs cultured in 20% FBS (d)
Gene set enrichment analysis (GSEA) on the global genes
| NAME | SIZE | ES | NES | FDR |
|---|---|---|---|---|
| Enriched gene sets in HPGF-C18 group (FDR < 0.25) | ||||
| HALLMARK_CHOLESTEROL_HOMEOSTASIS | 24 | 0.87 | 2.21 | 0.00 |
| HALLMARK_MTORC1_SIGNALING | 59 | 0.60 | 1.99 | 0.02 |
| HALLMARK_ANDROGEN_RESPONSE | 20 | 0.56 | 1.87 | 0.02 |
| KEGG_NEUROTROPHIN_SIGNALING_PATHWAY | 26 | 0.53 | 1.86 | 0.02 |
| HALLMARK_MITOTIC_SPINDLE | 49 | 0.71 | 1.88 | 0.02 |
| RESPONSE_TO_DNA_DAMAGE_STIMULUS | 38 | 0.69 | 1.89 | 0.02 |
| KEGG_P53_SIGNALING_PATHWAY | 20 | 0.69 | 1.89 | 0.02 |
| LIPID_BIOSYNTHETIC_PROCESS | 32 | 0.52 | 1.90 | 0.03 |
| NUCLEOCYTOPLASMIC_TRANSPORT | 20 | 0.69 | 1.83 | 0.03 |
| KEGG_PROGESTERONE_MEDIATED_OOCYTE_MATURATION | 25 | 0.72 | 1.91 | 0.03 |
| HALLMARK_INTERFERON_ALPHA_RESPONSE | 31 | 0.59 | 1.81 | 0.03 |
| M_PHASE | 38 | 0.72 | 1.74 | 0.04 |
| DNA_METABOLIC_PROCESS | 65 | 0.59 | 1.75 | 0.04 |
| CELL_CYCLE_PROCESS | 62 | 0.69 | 1.75 | 0.04 |
| HALLMARK_ADIPOGENESIS | 39 | 0.47 | 1.73 | 0.04 |
| DNA_REPAIR | 26 | 0.72 | 1.75 | 0.04 |
| CELL_CYCLE_GO_0007049 | 95 | 0.57 | 1.77 | 0.04 |
| HALLMARK_APOPTOSIS | 57 | 0.44 | 1.73 | 0.04 |
| DNA_RECOMBINATION | 15 | 0.80 | 1.75 | 0.04 |
| CELL_CYCLE_PHASE | 56 | 0.67 | 1.76 | 0.04 |
| HALLMARK_INTERFERON_GAMMA_RESPONSE | 63 | 0.48 | 1.77 | 0.05 |
| CHROMOSOME_ORGANIZATION_AND_BIOGENESIS | 24 | 0.63 | 1.78 | 0.05 |
| NUCLEAR_TRANSPORT | 21 | 0.66 | 1.77 | 0.05 |
| RESPONSE_TO_ENDOGENOUS_STIMULUS | 50 | 0.55 | 1.71 | 0.05 |
| KEGG_CELL_CYCLE | 45 | 0.73 | 1.70 | 0.05 |
| MITOTIC_CELL_CYCLE | 50 | 0.69 | 1.71 | 0.05 |
| BIOCARTA_HIVNEF_PATHWAY | 17 | 0.59 | 1.70 | 0.05 |
| MICROTUBULE_BASED_PROCESS | 25 | 0.62 | 1.70 | 0.05 |
| HALLMARK_DNA_REPAIR | 22 | 0.66 | 1.69 | 0.06 |
| CELL_CYCLE_CHECKPOINT_GO_0000075 | 20 | 0.74 | 1.68 | 0.06 |
| ESTABLISHMENT_OF_CELLULAR_LOCALIZATION | 71 | 0.42 | 1.66 | 0.07 |
| KEGG_OOCYTE_MEIOSIS | 31 | 0.56 | 1.66 | 0.07 |
| GAMETE_GENERATION | 37 | 0.47 | 1.66 | 0.07 |
| PROTEIN_TARGETING | 22 | 0.59 | 1.64 | 0.07 |
| ESTABLISHMENT_OF_PROTEIN_LOCALIZATION | 40 | 0.47 | 1.63 | 0.07 |
| KEGG_APOPTOSIS | 21 | 0.53 | 1.64 | 0.07 |
| HALLMARK_G2M_CHECKPOINT | 68 | 0.78 | 1.64 | 0.07 |
| M_PHASE_OF_MITOTIC_CELL_CYCLE | 26 | 0.75 | 1.64 | 0.07 |
| MACROMOLECULE_LOCALIZATION | 47 | 0.47 | 1.64 | 0.07 |
| ORGANELLE_ORGANIZATION_AND_BIOGENESIS | 118 | 0.41 | 1.62 | 0.07 |
| REGULATION_OF_CELL_CYCLE | 57 | 0.53 | 1.62 | 0.07 |
| MITOSIS | 26 | 0.75 | 1.64 | 0.07 |
| CELLULAR_LOCALIZATION | 74 | 0.41 | 1.61 | 0.08 |
| DNA_DEPENDENT_DNA_REPLICATION | 15 | 0.70 | 1.61 | 0.08 |
| PROTEIN_TRANSPORT | 35 | 0.47 | 1.60 | 0.08 |
| CYTOSKELETON_ORGANIZATION_AND_BIOGENESIS | 71 | 0.40 | 1.58 | 0.10 |
| DNA_REPLICATION | 26 | 0.63 | 1.58 | 0.10 |
| KEGG_PEROXISOME | 21 | 0.46 | 1.57 | 0.10 |
| CELL_MIGRATION | 26 | 0.43 | 1.56 | 0.11 |
| HALLMARK_ESTROGEN_RESPONSE_EARLY | 63 | 0.40 | 1.56 | 0.11 |
| PROTEIN_LOCALIZATION | 42 | 0.46 | 1.56 | 0.11 |
| DETECTION_OF_STIMULUS | 19 | 0.55 | 1.55 | 0.11 |
| HALLMARK_IL2_STAT5_SIGNALING | 59 | 0.37 | 1.54 | 0.12 |
| INTRACELLULAR_PROTEIN_TRANSPORT | 30 | 0.49 | 1.53 | 0.12 |
| INTERPHASE | 22 | 0.60 | 1.53 | 0.12 |
| CELL_PROLIFERATION_GO_0008283 | 185 | 0.34 | 1.53 | 0.12 |
| HALLMARK_E2F_TARGETS | 60 | 0.72 | 1.52 | 0.13 |
| INTERPHASE_OF_MITOTIC_CELL_CYCLE | 19 | 0.61 | 1.51 | 0.13 |
| SEXUAL_REPRODUCTION | 48 | 0.46 | 1.51 | 0.13 |
| ORGAN_MORPHOGENESIS | 54 | 0.37 | 1.50 | 0.14 |
| ANATOMICAL_STRUCTURE_MORPHOGENESIS | 118 | 0.33 | 1.50 | 0.14 |
| HALLMARK_UV_RESPONSE_UP | 49 | 0.37 | 1.49 | 0.15 |
| KEGG_PYRIMIDINE_METABOLISM | 22 | 0.55 | 1.48 | 0.16 |
| NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS | 263 | 0.34 | 1.48 | 0.16 |
| RESPONSE_TO_STRESS | 140 | 0.32 | 1.46 | 0.17 |
| TRANSLATION | 30 | 0.42 | 1.46 | 0.17 |
| HALLMARK_SPERMATOGENESIS | 47 | 0.45 | 1.45 | 0.18 |
| ACTIN_CYTOSKELETON_ORGANIZATION_AND_BIOGENESIS | 38 | 0.36 | 1.45 | 0.18 |
| KEGG_BASAL_CELL_CARCINOMA | 16 | 0.47 | 1.41 | 0.22 |
| HALLMARK_TNFA_SIGNALING_VIA_NFKB | 69 | 0.38 | 1.39 | 0.24 |
| Enriched gene sets in FBS group (FDR < 0.25) | ||||
| HALLMARK_GLYCOLYSIS | 54 | 0.56 | 1.97 | 0.02 |
| ACTIVATION_OF_MAPK_ACTIVITY | 15 | 0.65 | 1.73 | 0.14 |
| POSITIVE_REGULATION_OF_MAP_KINASE_ACTIVITY | 17 | 0.63 | 1.72 | 0.14 |
| KEGG_CELL_ADHESION_MOLECULES_CAMS | 48 | 0.49 | 1.68 | 0.15 |
| KEGG_ECM_RECEPTOR_INTERACTION | 33 | 0.54 | 1.74 | 0.15 |
| KEGG_FOCAL_ADHESION | 61 | 0.43 | 1.66 | 0.16 |
| HALLMARK_HYPOXIA | 66 | 0.51 | 1.68 | 0.16 |
| KEGG_TGF_BETA_SIGNALING_PATHWAY | 25 | 0.55 | 1.68 | 0.17 |
| EXTRACELLULAR_STRUCTURE_ORGANIZATION_AND_BIOGENESIS | 16 | 0.73 | 1.74 | 0.18 |
| FEMALE_PREGNANCY | 21 | 0.59 | 1.75 | 0.23 |
| HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION | 79 | 0.51 | 1.78 | 0.23 |
| TRANSMEMBRANE_RECEPTOR_PROTEIN_SERINE_THREONINE_KINASE_SIGNALING_PATHWAY | 18 | 0.54 | 1.60 | 0.25 |
ES enrichment score, NES normalized enrichment score, FDR false discovery rate
qRT-PCR analysis of differentially expressed genes
| Genes | p value | FDR | FS20/PF10 fold change |
|---|---|---|---|
| PDPN | 0.00 | 0.00 | − 28.57 |
| TNFSF10 | 0.00 | 0.00 | − 27.78 |
| TLR5 | 0.00 | 0.00 | − 13.89 |
| MMP1 | 0.00 | 0.00 | − 12.66 |
| BMPR1B | 0.00 | 0.00 | − 12.05 |
| TP63 | 0.02 | 0.04 | − 11.11 |
| CTSC | 0.00 | 0.00 | − 9.09 |
| INSIG1 | 0.00 | 0.00 | − 8.33 |
| CTSK | 0.00 | 0.00 | − 8.33 |
| EGR2 | 0.00 | 0.00 | − 7.69 |
| KLF8 | 0.00 | 0.00 | − 6.25 |
| PLXDC1 | 0.00 | 0.01 | − 5.56 |
| COMP | 0.00 | 0.01 | − 5.56 |
| IL16 | 0.01 | 0.03 | − 5.56 |
| ROBO4 | 0.01 | 0.03 | − 5.26 |
| TGFB3 | 0.00 | 0.01 | − 4.55 |
| IL27RA | 0.00 | 0.01 | − 4.35 |
| CHRD | 0.01 | 0.02 | − 3.70 |
| WNT7B | 0.02 | 0.04 | − 3.70 |
| MMP13 | 0.06 | 0.10 | − 3.03 |
| TNFAIP6 | 0.02 | 0.04 | − 2.63 |
| SMAD1 | 0.04 | 0.08 | − 2.44 |
| SRGN | 0.04 | 0.08 | 2.13 |
| TGFBI | 0.05 | 0.09 | 2.32 |
| IL6 | 0.04 | 0.08 | 2.54 |
| HMOX1 | 0.05 | 0.09 | 2.62 |
| CD40 | 0.03 | 0.06 | 2.88 |
| LTBP1 | 0.04 | 0.08 | 3.36 |
| HOXA3 | 0.01 | 0.03 | 3.53 |
| ALDH1A3 | 0.02 | 0.04 | 3.56 |
| SMAD6 | 0.03 | 0.06 | 3.72 |
| STC2 | 0.01 | 0.03 | 3.74 |
| ID2 | 0.00 | 0.01 | 3.86 |
| MFGE8 | 0.01 | 0.02 | 3.94 |
| CCL26 | 0.00 | 0.01 | 4.32 |
| DKK1 | 0.00 | 0.01 | 4.51 |
| HAS2 | 0.03 | 0.05 | 5.48 |
| PTGS2 | 0.00 | 0.00 | 5.66 |
| ID4 | 0.00 | 0.00 | 6.63 |
| BMP6 | 0.00 | 0.00 | 6.96 |
| TGFB2 | 0.00 | 0.00 | 7.21 |
| KRT18 | 0.00 | 0.00 | 7.96 |
| IL1B | 0.00 | 0.01 | 8.44 |
| SFRP1 | 0.00 | 0.00 | 8.64 |
| LEPR | 0.00 | 0.00 | 14.92 |
| PGF | 0.00 | 0.00 | 19.59 |
| SERPINE2 | 0.00 | 0.01 | 20.77 |
| HAS3 | 0.00 | 0.01 | 21.80 |
| SERPING1 | 0.00 | 0.01 | 32.69 |
| PTGES | 0.00 | 0.00 | 42.11 |
| PTGIS | 0.00 | 0.00 | 53.63 |
| BEX2 | 0.00 | 0.00 | 53.81 |
microRNA identified by RT-qPCR
| miRNA | p value | FDR | FS20/PF10 fold change |
|---|---|---|---|
| hsa-miR-146a | 0.00 | 0.07 | − 7.69 |
| hsa-miR-135b | 0.00 | 0.07 | − 7.69 |
| hsa-miR-378 | 0.00 | 0.07 | − 4.35 |
| hsa-miR-146b-5p | 0.00 | 0.07 | − 4.00 |
| hsa-miR-33a | 0.02 | 0.15 | − 3.57 |
| hsa-miR-126* | 0.02 | 0.15 | − 3.13 |
| hsa-miR-218 | 0.01 | 0.13 | − 3.03 |
| hsa-miR-135a | 0.00 | 0.07 | − 2.78 |
| hsa-miR-542-5p | 0.01 | 0.09 | − 2.50 |
| hsa-miR-15b* | 0.01 | 0.09 | − 2.00 |
| hsa-miR-142-3p | 0.00 | 0.07 | − 1.96 |
| hsa-miR-450a | 0.01 | 0.11 | − 1.89 |
| hsa-miR-29b | 0.00 | 0.07 | − 1.79 |
| hsa-miR-424 | 0.00 | 0.07 | − 1.67 |
| hsa-miR-149 | 0.01 | 0.13 | − 1.64 |
| hsa-miR-132 | 0.03 | 0.17 | − 1.61 |
| hsa-miR-20a | 0.02 | 0.14 | − 1.59 |
| hsa-miR-455-5p | 0.01 | 0.13 | − 1.43 |
| hsa-miR-484 | 0.01 | 0.08 | − 1.41 |
| hsa-miR-576-5p | 0.02 | 0.14 | − 1.33 |
| hsa-miR-15a | 0.03 | 0.18 | − 1.18 |
| hsa-miR-28-5p | 0.00 | 0.07 | 1.19 |
| hsa-let-7i* | 0.04 | 0.24 | 1.69 |
| hsa-miR-493 | 0.00 | 0.07 | 1.76 |
| hsa-miR-485-3p | 0.02 | 0.15 | 1.77 |
| hsa-let-7i | 0.02 | 0.15 | 1.80 |
| hsa-miR-380 | 0.01 | 0.14 | 1.82 |
| hsa-miR-337-3p | 0.01 | 0.11 | 1.83 |
| hsa-miR-127-3p | 0.01 | 0.09 | 1.86 |
| hsa-miR-495 | 0.03 | 0.17 | 1.90 |
| hsa-miR-299-3p | 0.00 | 0.07 | 2.04 |
| hsa-miR-431 | 0.02 | 0.15 | 2.04 |
| hsa-miR-411 | 0.00 | 0.07 | 2.09 |
| hsa-miR-1 | 0.02 | 0.14 | 2.14 |
| hsa-miR-487a | 0.01 | 0.13 | 2.21 |
| hsa-miR-376c | 0.02 | 0.14 | 2.21 |
| hsa-miR-487b | 0.00 | 0.07 | 2.23 |
| hsa-miR-329 | 0.01 | 0.14 | 2.30 |
| hsa-miR-127-5p | 0.00 | 0.07 | 2.62 |
| hsa-miR-379 | 0.04 | 0.24 | 2.76 |
| hsa-miR-210 | 0.02 | 0.14 | 3.04 |
| hsa-miR-432 | 0.02 | 0.15 | 3.46 |
| hsa-miR-452 | 0.03 | 0.21 | 3.79 |
| hsa-miR-335 | 0.00 | 0.07 | 12.76 |
Asterick (*) is a part of the microRNA name, indicating the microRNA arises from the 3′ arm of a hairpin