Literature DB >> 29531065

Blindfold learning of an accurate neural metric.

Christophe Gardella1,2, Olivier Marre3, Thierry Mora4.   

Abstract

The brain has no direct access to physical stimuli but only to the spiking activity evoked in sensory organs. It is unclear how the brain can learn representations of the stimuli based on those noisy, correlated responses alone. Here we show how to build an accurate distance map of responses solely from the structure of the population activity of retinal ganglion cells. We introduce the Temporal Restricted Boltzmann Machine to learn the spatiotemporal structure of the population activity and use this model to define a distance between spike trains. We show that this metric outperforms existing neural distances at discriminating pairs of stimuli that are barely distinguishable. The proposed method provides a generic and biologically plausible way to learn to associate similar stimuli based on their spiking responses, without any other knowledge of these stimuli.

Keywords:  Restricted Boltzmann Machines; neural activity population models; neural metric; retina; sensory discrimination

Mesh:

Year:  2018        PMID: 29531065      PMCID: PMC5879683          DOI: 10.1073/pnas.1718710115

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  41 in total

1.  Synergy, redundancy, and independence in population codes.

Authors:  Elad Schneidman; William Bialek; Michael J Berry
Journal:  J Neurosci       Date:  2003-12-17       Impact factor: 6.167

2.  Spike-timing codes enhance the representation of multiple simultaneous sound-localization cues in the inferior colliculus.

Authors:  Steven M Chase; Eric D Young
Journal:  J Neurosci       Date:  2006-04-12       Impact factor: 6.167

3.  A maximum entropy model applied to spatial and temporal correlations from cortical networks in vitro.

Authors:  Aonan Tang; David Jackson; Jon Hobbs; Wei Chen; Jodi L Smith; Hema Patel; Anita Prieto; Dumitru Petrusca; Matthew I Grivich; Alexander Sher; Pawel Hottowy; Wladyslaw Dabrowski; Alan M Litke; John M Beggs
Journal:  J Neurosci       Date:  2008-01-09       Impact factor: 6.167

4.  Decoding visual information from a population of retinal ganglion cells.

Authors:  D K Warland; P Reinagel; M Meister
Journal:  J Neurophysiol       Date:  1997-11       Impact factor: 2.714

5.  Gibbs distribution analysis of temporal correlations structure in retina ganglion cells.

Authors:  J C Vasquez; O Marre; A G Palacios; M J Berry; B Cessac
Journal:  J Physiol Paris       Date:  2011-11-17

Review 6.  Eye smarter than scientists believed: neural computations in circuits of the retina.

Authors:  Tim Gollisch; Markus Meister
Journal:  Neuron       Date:  2010-01-28       Impact factor: 17.173

7.  Representation of visual scenes by local neuronal populations in layer 2/3 of mouse visual cortex.

Authors:  Björn M Kampa; Morgane M Roth; Werner Göbel; Fritjof Helmchen
Journal:  Front Neural Circuits       Date:  2011-12-12       Impact factor: 3.492

8.  A small world of neuronal synchrony.

Authors:  Shan Yu; Debin Huang; Wolf Singer; Danko Nikolic
Journal:  Cereb Cortex       Date:  2008-04-09       Impact factor: 5.357

9.  Error-Robust Modes of the Retinal Population Code.

Authors:  Jason S Prentice; Olivier Marre; Mark L Ioffe; Adrianna R Loback; Gašper Tkačik; Michael J Berry
Journal:  PLoS Comput Biol       Date:  2016-11-17       Impact factor: 4.475

10.  Timescales of inference in visual adaptation.

Authors:  Barry Wark; Adrienne Fairhall; Fred Rieke
Journal:  Neuron       Date:  2009-03-12       Impact factor: 17.173

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  4 in total

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Journal:  PLoS Comput Biol       Date:  2021-10-11       Impact factor: 4.475

2.  Measures of Neural Similarity.

Authors:  S Bobadilla-Suarez; C Ahlheim; A Mehrotra; A Panos; B C Love
Journal:  Comput Brain Behav       Date:  2019-12-02

3.  Optimal Encoding in Stochastic Latent-Variable Models.

Authors:  Michael E Rule; Martino Sorbaro; Matthias H Hennig
Journal:  Entropy (Basel)       Date:  2020-06-28       Impact factor: 2.524

4.  Modeling a population of retinal ganglion cells with restricted Boltzmann machines.

Authors:  Riccardo Volpi; Matteo Zanotto; Alessandro Maccione; Stefano Di Marco; Luca Berdondini; Diego Sona; Vittorio Murino
Journal:  Sci Rep       Date:  2020-10-06       Impact factor: 4.379

  4 in total

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