Literature DB >> 29528114

Understanding and designing head-to-tail cyclic peptides.

Diana P Slough1, Sean M McHugh1, Yu-Shan Lin1.   

Abstract

Cyclic peptides (CPs) are an exciting class of molecules with a variety of applications. However, design strategies for CP therapeutics, for example, are generally limited by a poor understanding of their sequence-structure relationships. This knowledge gap often leads to a trial-and-error approach for designing CPs for a specific purpose, which is both costly and time-consuming. Herein, we describe the current experimental and computational efforts in understanding and designing head-to-tail CPs along with their respective challenges. In addition, we provide several future directions in the field of computational CP design to improve its accuracy, efficiency and applicability. These advances, combined with experimental techniques, shall ultimately provide a better understanding of these interesting molecules and a reliable working platform to rationally design CPs with desired characteristics.
© 2018 Wiley Periodicals, Inc.

Entities:  

Keywords:  cyclic peptide; molecular dynamics; sequence-structure relationship

Mesh:

Substances:

Year:  2018        PMID: 29528114      PMCID: PMC6135719          DOI: 10.1002/bip.23113

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  165 in total

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Journal:  Biopolymers       Date:  1993-04       Impact factor: 2.505

6.  Solvent-induced conformational changes in cyclic peptides: a vibrational circular dichroism study.

Authors:  Christian Merten; Fee Li; Kenny Bravo-Rodriguez; Elsa Sanchez-Garcia; Yunjie Xu; Wolfram Sander
Journal:  Phys Chem Chem Phys       Date:  2014-02-11       Impact factor: 3.676

7.  Hitting a Moving Target: How Does an N-Methyl Group Impact Biological Activity?

Authors:  Yen Chin Koay; Nicole L Richardson; Samantha S Zaiter; Jessica Kho; Sheena Y Nguyen; Daniel H Tran; Ka Wai Lee; Laura K Buckton; Shelli R McAlpine
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Journal:  Biopolymers       Date:  1994-11       Impact factor: 2.505

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Authors:  Yumin Chen; Ke Deng; Xiaohui Qiu; Chen Wang
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

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  3 in total

1.  Understanding Cell Penetration of Cyclic Peptides.

Authors:  Patrick G Dougherty; Ashweta Sahni; Dehua Pei
Journal:  Chem Rev       Date:  2019-05-14       Impact factor: 60.622

Review 2.  Elucidating Solution Structures of Cyclic Peptides Using Molecular Dynamics Simulations.

Authors:  Jovan Damjanovic; Jiayuan Miao; He Huang; Yu-Shan Lin
Journal:  Chem Rev       Date:  2021-01-11       Impact factor: 60.622

3.  Structure prediction of cyclic peptides by molecular dynamics + machine learning.

Authors:  Jiayuan Miao; Marc L Descoteaux; Yu-Shan Lin
Journal:  Chem Sci       Date:  2021-11-05       Impact factor: 9.969

  3 in total

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