Literature DB >> 24513908

Solvent-induced conformational changes in cyclic peptides: a vibrational circular dichroism study.

Christian Merten1, Fee Li, Kenny Bravo-Rodriguez, Elsa Sanchez-Garcia, Yunjie Xu, Wolfram Sander.   

Abstract

The three-dimensional structure of a peptide is strongly influenced by its solvent environment. In the present study, we study three cyclic tetrapeptides which serve as model peptides for β-turns. They are of the general structure cyclo(Boc-Cys-Pro-X-Cys-OMe) with the amino acid X being either glycine (1), or L- or D-leucine (L- or D-2). Using vibrational circular dichroism (VCD) spectroscopy, we confirm previous NMR results which showed that D-2 adopts predominantly a βII turn structure in apolar and polar solvents. Our results for L-2 indicate a preference for a βI structure over βII. With increasing solvent polarity, the preference for 1 is shifted from βII towards βI. This conformational change goes along with the breaking of an intramolecular hydrogen bond which stabilizes the βII conformation. Instead, a hydrogen bond with a solvent molecule can stabilize the βI turn conformation.

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Year:  2014        PMID: 24513908     DOI: 10.1039/c3cp55018d

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  8 in total

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Authors:  Diana P Slough; Sean M McHugh; Yu-Shan Lin
Journal:  Biopolymers       Date:  2018-03-12       Impact factor: 2.505

2.  Designing Well-Structured Cyclic Pentapeptides Based on Sequence-Structure Relationships.

Authors:  Diana P Slough; Sean M McHugh; Ashleigh E Cummings; Peng Dai; Bradley L Pentelute; Joshua A Kritzer; Yu-Shan Lin
Journal:  J Phys Chem B       Date:  2018-03-28       Impact factor: 2.991

Review 3.  Elucidating Solution Structures of Cyclic Peptides Using Molecular Dynamics Simulations.

Authors:  Jovan Damjanovic; Jiayuan Miao; He Huang; Yu-Shan Lin
Journal:  Chem Rev       Date:  2021-01-11       Impact factor: 60.622

Review 4.  Enhanced sampling without borders: on global biasing functions and how to reweight them.

Authors:  Anna S Kamenik; Stephanie M Linker; Sereina Riniker
Journal:  Phys Chem Chem Phys       Date:  2022-01-19       Impact factor: 3.676

5.  Structure prediction of cyclic peptides by molecular dynamics + machine learning.

Authors:  Jiayuan Miao; Marc L Descoteaux; Yu-Shan Lin
Journal:  Chem Sci       Date:  2021-11-05       Impact factor: 9.969

6.  A Computational Protocol for Vibrational Circular Dichroism Spectra of Cyclic Oligopeptides.

Authors:  Karolina Di Remigio Eikås; Maarten T P Beerepoot; Kenneth Ruud
Journal:  J Phys Chem A       Date:  2022-08-05       Impact factor: 2.944

7.  Dynamic Stereochemistry of a Biphenyl-Bisprolineamide Model Catalyst and its Imidazolidinone Intermediates.

Authors:  Tino P Golub; Malte Feßner; Elric Engelage; Christian Merten
Journal:  Chemistry       Date:  2022-06-23       Impact factor: 5.020

8.  Bifurcatriol, a New Antiprotozoal Acyclic Diterpene from the Brown Alga Bifurcaria bifurcata.

Authors:  Vangelis Smyrniotopoulos; Christian Merten; Marcel Kaiser; Deniz Tasdemir
Journal:  Mar Drugs       Date:  2017-08-02       Impact factor: 5.118

  8 in total

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