Literature DB >> 29524131

Neuroepigenetic Editing.

Peter J Hamilton1, Carissa J Lim2, Eric J Nestler1, Elizabeth A Heller3,4.   

Abstract

Studies of the mammalian nervous system have revealed widespread epigenetic regulation underlying gene expression intrinsic to basic neurobiological function as well as neurological disease. Over the past decade, a critical role has emerged for the neural regulation of chromatin-modifying enzymes during both development and adulthood, and in response to external stimuli. These biochemical data are complemented by numerous next generation sequencing (NGS) studies that quantify the extent of chromatin and DNA modifications in neurons. Neuroepigenetic editing tools can be applied to distinguish between the mere presence and functional relevance of such modifications to neural transcription and animal behavior. This review discusses current advances in neuroepigenetic editing, highlighting methodological considerations pertinent to neuroscience, such as delivery methods and the spatiotemporal specificity of editing. Although neuroepigenetic editing is a nascent field, the studies presented in this review demonstrate the enormous potential of this approach for basic neurobiological research and therapeutic application.

Entities:  

Keywords:  Chromatin; Epigenetic editing; Neuroscience; Psychiatric disease

Mesh:

Substances:

Year:  2018        PMID: 29524131      PMCID: PMC6047758          DOI: 10.1007/978-1-4939-7774-1_5

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  102 in total

1.  Zinc-finger protein-targeted gene regulation: genomewide single-gene specificity.

Authors:  Siyuan Tan; Dmitry Guschin; Albert Davalos; Ya-Li Lee; Andrew W Snowden; Yann Jouvenot; H Steven Zhang; Katherine Howes; Andrew R McNamara; Albert Lai; Chris Ullman; Lindsey Reynolds; Michael Moore; Mark Isalan; Lutz-Peter Berg; Bradley Campos; Hong Qi; S Kaye Spratt; Casey C Case; Carl O Pabo; Judith Campisi; Philip D Gregory
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-26       Impact factor: 11.205

2.  Chd8 Mutation Leads to Autistic-like Behaviors and Impaired Striatal Circuits.

Authors:  Randall J Platt; Yang Zhou; Ian M Slaymaker; Ashwin S Shetty; Niels R Weisbach; Jin-Ah Kim; Jitendra Sharma; Mitul Desai; Sabina Sood; Hannah R Kempton; Gerald R Crabtree; Guoping Feng; Feng Zhang
Journal:  Cell Rep       Date:  2017-04-11       Impact factor: 9.423

3.  Designer TALEs team up for highly efficient gene induction.

Authors:  Annekatrin Richter; Jens Boch
Journal:  Nat Methods       Date:  2013-03       Impact factor: 28.547

4.  Synthetic zinc finger repressors reduce mutant huntingtin expression in the brain of R6/2 mice.

Authors:  Mireia Garriga-Canut; Carmen Agustín-Pavón; Frank Herrmann; Aurora Sánchez; Mara Dierssen; Cristina Fillat; Mark Isalan
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-10       Impact factor: 11.205

5.  TET1 controls CNS 5-methylcytosine hydroxylation, active DNA demethylation, gene transcription, and memory formation.

Authors:  Garrett A Kaas; Chun Zhong; Dawn E Eason; Daniel L Ross; Raj V Vachhani; Guo-Li Ming; Jennifer R King; Hongjun Song; J David Sweatt
Journal:  Neuron       Date:  2013-09-18       Impact factor: 17.173

6.  Breaking the code of DNA binding specificity of TAL-type III effectors.

Authors:  Jens Boch; Heidi Scholze; Sebastian Schornack; Angelika Landgraf; Simone Hahn; Sabine Kay; Thomas Lahaye; Anja Nickstadt; Ulla Bonas
Journal:  Science       Date:  2009-12-11       Impact factor: 47.728

Review 7.  Epigenetic mechanisms in neurological disease.

Authors:  Mira Jakovcevski; Schahram Akbarian
Journal:  Nat Med       Date:  2012-08       Impact factor: 53.440

8.  Engineering complex synthetic transcriptional programs with CRISPR RNA scaffolds.

Authors:  Jesse G Zalatan; Michael E Lee; Ricardo Almeida; Luke A Gilbert; Evan H Whitehead; Marie La Russa; Jordan C Tsai; Jonathan S Weissman; John E Dueber; Lei S Qi; Wendell A Lim
Journal:  Cell       Date:  2014-12-18       Impact factor: 41.582

9.  Revealing off-target cleavage specificities of zinc-finger nucleases by in vitro selection.

Authors:  Vikram Pattanayak; Cherie L Ramirez; J Keith Joung; David R Liu
Journal:  Nat Methods       Date:  2011-08-07       Impact factor: 28.547

10.  Efficient genome editing in the mouse brain by local delivery of engineered Cas9 ribonucleoprotein complexes.

Authors:  Brett T Staahl; Madhurima Benekareddy; Claire Coulon-Bainier; Ashwin A Banfal; Stephen N Floor; Jennifer K Sabo; Cole Urnes; Gabriela Acevedo Munares; Anirvan Ghosh; Jennifer A Doudna
Journal:  Nat Biotechnol       Date:  2017-02-13       Impact factor: 54.908

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  10 in total

Review 1.  In vivo locus-specific editing of the neuroepigenome.

Authors:  Yun Young Yim; Collin D Teague; Eric J Nestler
Journal:  Nat Rev Neurosci       Date:  2020-07-23       Impact factor: 34.870

Review 2.  Epigenetic Mechanisms of Opioid Addiction.

Authors:  Caleb J Browne; Arthur Godino; Marine Salery; Eric J Nestler
Journal:  Biol Psychiatry       Date:  2019-07-08       Impact factor: 13.382

Review 3.  The past and presence of gene targeting: from chemicals and DNA via proteins to RNA.

Authors:  T M Geel; M H J Ruiters; R H Cool; L Halby; D C Voshart; L Andrade Ruiz; K E Niezen-Koning; P B Arimondo; M G Rots
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-06-05       Impact factor: 6.237

Review 4.  Epigenetics and addiction.

Authors:  Peter J Hamilton; Eric J Nestler
Journal:  Curr Opin Neurobiol       Date:  2019-06-27       Impact factor: 6.627

Review 5.  An emerging perspective on 'histone code' mediated regulation of neural plasticity and disease.

Authors:  Lorna A Farrelly; Ian Maze
Journal:  Curr Opin Neurobiol       Date:  2019-08-02       Impact factor: 6.627

Review 6.  Examining the contribution of histone modification to sex differences in learning and memory.

Authors:  Ashley A Keiser; Marcelo A Wood
Journal:  Learn Mem       Date:  2019-08-15       Impact factor: 2.460

7.  The "systems approach" to treating the brain: opportunities in developmental psychopharmacology
.

Authors:  Silvia Bussone; Luisa Lo Iacono
Journal:  Dialogues Clin Neurosci       Date:  2019       Impact factor: 5.986

8.  Epigenetic Priming in Drug Addiction.

Authors:  Philipp Mews; Deena M Walker; Eric J Nestler
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2019-04-01

Review 9.  Crossroads of Drug Abuse and HIV Infection: Neurotoxicity and CNS Reservoir.

Authors:  Shilpa Sonti; Kratika Tyagi; Amit Pande; Rene Daniel; Adhikarimayum Lakhikumar Sharma; Mudit Tyagi
Journal:  Vaccines (Basel)       Date:  2022-01-27

Review 10.  Cell-type-specific epigenetic effects of early life stress on the brain.

Authors:  Mouly F Rahman; Patrick O McGowan
Journal:  Transl Psychiatry       Date:  2022-08-10       Impact factor: 7.989

  10 in total

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