Literature DB >> 29516323

Toward faster inference of micron-scale axon diameters using Monte Carlo simulations.

Morgan Mercredi1, Melanie Martin2,3.   

Abstract

OBJECT: Recent advances have allowed oscillating gradient (OG) diffusion MRI to infer the sizes of micron-scale axon diameters. Here the effects on the precision of the inferred diameters are studied when reducing the number of images collected to reduce imaging time for clinical feasibility.
MATERIALS AND METHODS: Monte Carlo simulations of cosine OG sequences (50-1000 Hz) using a two-compartment model on a parallel cylinder (diameters 1-5 μm) geometry were conducted. Temporal diffusion spectroscopy was used to infer axon diameters. Three different gradient sets were simulated with different combinations of gradient strengths.
RESULTS: Five frequencies were adequate for d = 3-5 μm with single-sized cylinders and for effective mean axon diameters greater than 2 μm for cylinders with a distributions of diameters. There was some improvement in precision for d = 1-2 μm with 10 frequencies. It is better to repeat measurements at higher gradient strengths than to use a range of gradient strengths. The improvement tended to be greatest when using fewer frequencies and was especially noticeable at very high gradient strengths.
CONCLUSION: Images can be collected with fewer gradient strengths and frequencies without sacrificing the precision of the measurements. This could be useful in reducing imaging time so that OG techniques can be used in clinical settings.

Keywords:  Computer simulation; Diffusion magnetic resonance imaging; Neuroanatomy

Mesh:

Year:  2018        PMID: 29516323     DOI: 10.1007/s10334-018-0680-1

Source DB:  PubMed          Journal:  MAGMA        ISSN: 0968-5243            Impact factor:   2.310


  27 in total

1.  Oscillating gradient measurements of water diffusion in normal and globally ischemic rat brain.

Authors:  Mark D Does; Edward C Parsons; John C Gore
Journal:  Magn Reson Med       Date:  2003-02       Impact factor: 4.668

2.  The importance of axonal undulation in diffusion MR measurements: a Monte Carlo simulation study.

Authors:  Markus Nilsson; Jimmy Lätt; Freddy Ståhlberg; Danielle van Westen; Håkan Hagslätt
Journal:  NMR Biomed       Date:  2011-10-21       Impact factor: 4.044

3.  A general framework for experiment design in diffusion MRI and its application in measuring direct tissue-microstructure features.

Authors:  Daniel C Alexander
Journal:  Magn Reson Med       Date:  2008-08       Impact factor: 4.668

4.  Convergence and parameter choice for Monte-Carlo simulations of diffusion MRI.

Authors:  Matt G Hall; Daniel C Alexander
Journal:  IEEE Trans Med Imaging       Date:  2009-03-04       Impact factor: 10.048

5.  A simple matrix formalism for spin echo analysis of restricted diffusion under generalized gradient waveforms

Authors: 
Journal:  J Magn Reson       Date:  1997-11       Impact factor: 2.229

6.  Assessing the accuracy of using oscillating gradient spin echo sequences with AxCaliber to infer micron-sized axon diameters.

Authors:  Morgan Mercredi; Trevor J Vincent; Christopher P Bidinosti; Melanie Martin
Journal:  MAGMA       Date:  2016-07-13       Impact factor: 2.310

7.  Axon diameter mapping in the presence of orientation dispersion with diffusion MRI.

Authors:  Hui Zhang; Penny L Hubbard; Geoff J M Parker; Daniel C Alexander
Journal:  Neuroimage       Date:  2011-02-19       Impact factor: 6.556

8.  Quantitative characterization of tissue microstructure with temporal diffusion spectroscopy.

Authors:  Junzhong Xu; Mark D Does; John C Gore
Journal:  J Magn Reson       Date:  2009-07-03       Impact factor: 2.229

9.  Mapping mean axon diameter and axonal volume fraction by MRI using temporal diffusion spectroscopy.

Authors:  Junzhong Xu; Hua Li; Kevin D Harkins; Xiaoyu Jiang; Jingping Xie; Hakmook Kang; Mark D Does; John C Gore
Journal:  Neuroimage       Date:  2014-09-16       Impact factor: 6.556

10.  Towards higher sensitivity and stability of axon diameter estimation with diffusion-weighted MRI.

Authors:  Farshid Sepehrband; Daniel C Alexander; Nyoman D Kurniawan; David C Reutens; Zhengyi Yang
Journal:  NMR Biomed       Date:  2016-01-08       Impact factor: 4.044

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  2 in total

1.  Inferring diameters of spheres and cylinders using interstitial water.

Authors:  Sheryl L Herrera; Morgan E Mercredi; Richard Buist; Melanie Martin
Journal:  MAGMA       Date:  2018-06-04       Impact factor: 2.310

2.  Towards microstructure fingerprinting: Estimation of tissue properties from a dictionary of Monte Carlo diffusion MRI simulations.

Authors:  Gaëtan Rensonnet; Benoît Scherrer; Gabriel Girard; Aleksandar Jankovski; Simon K Warfield; Benoît Macq; Jean-Philippe Thiran; Maxime Taquet
Journal:  Neuroimage       Date:  2018-09-30       Impact factor: 6.556

  2 in total

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