| Literature DB >> 29497326 |
Marika Plöthner1, Katharina Schmidt1, Clarissa Schips1, Kathrin Damm1.
Abstract
OBJECTIVE: The aim of this study was to identify the preferences for whole genome sequencing (WGS) tests without genetic counseling.Entities:
Keywords: discrete choice experiment; genetic testing; latent class model; preferences; whole genome sequencing; willingness to pay
Year: 2018 PMID: 29497326 PMCID: PMC5818841 DOI: 10.2147/PGPM.S149803
Source DB: PubMed Journal: Pharmgenomics Pers Med ISSN: 1178-7066
Overview of attributes with the corresponding levels
| Attribute | Description in the questionnaire | Level 1 | Level 2 | Level 3 | Level 4 |
|---|---|---|---|---|---|
| Accuracy (sensitivity) | Test accuracy describes the proportion of persons with an identified genetic mutation that actually have this mutation |
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| Identified diseases | You can choose about the test results you want to be informed | All diseases | Treatable disease | Serious hereditary disease | |
| Test costs | A WGS is an innovative, diagnostic instrument and currently associated with high execution costs. You should decide how much money you are willing to pay for this comprehensive genetic analysis |
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| Probability of occurrence | The results of a WGS determine the risk of being affected by a specific disease. A genetic mutation enables statements about the probability of developing different diseases. | 10% | 40% | 70% | |
| Access to data | WGS is associated with a large amount of personal data. |
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Abbreviation: WGS, whole genome sequencing.
Figure 1Example of a choice set.
Notes: Explanation for the example choice set: The participant could choose between test 1 and test 2. Test 1 is characterized by a lower test accuracy (95%), with the reporting of treatable results at a 10% probability of disease occurrence as well as higher cost (€1,500), and the access for insurer. Test 2 is designed with a higher accuracy (99%), with the reporting of serious hereditary diseases at a higher probability of disease occurrence (70%) and at lower cost (€500). Furthermore, in test 2, no one else had access to the test results. The participant has to trade-off between a test accuracy of 95 and 99%, the costs of €1,500 and €500, and so on.
Sample description
| Variable | Occurrence in the sample |
|---|---|
| Participants (number) | 323 |
| With at least one valid DCE task | 301 |
| Sex (% women) | 69 |
| Age in years (median, SD) | 28 (13.86) |
| Own children (% having at least one child) | 41 |
| Desire to have children (%) | |
| Yes | 50 |
| No | 39 |
| Unsure | 11 |
| Highest level of education (%) | |
| No graduation | 1 |
| Primary school | 6 |
| Secondary school | 34 |
| High school | 24 |
| University | 34 |
| Income (%) | |
| No own income (€) | 16 |
| <1,000 | 27 |
| 1,000–<2,000 | 29 |
| 2,000–<3,000 | 17 |
| 3,000–<4,000 | 6 |
| ≥4,000 | 4 |
| Participation in screening program (%) | |
| Never | 51 |
| Every 10 years | 3 |
| Every 5 years | 9 |
| Every 2 years | 21 |
| 1–2 times a year | 15 |
| Subjective health status (%) | |
| Very bad | 0 |
| Bad | 4 |
| Medium | 24 |
| Good | 56 |
| Very good | 16 |
| Hereditary diseases in the family (% yes) | 20 |
| Afraid of hereditary diseases (% yes) | 21 |
Note: Median: average.
Abbreviations: DCE, discrete choice experiment; SD, standard deviation.
Figure 2LCMLM for preferences concerning genetic testing – attribute effects.
Note: *Significant values (P<0.05).
Abbreviations: EDL, educational level; HSn, health status (numeric); INCn, income (numeric); LCMLM, latent class mixed logit model.
Marginal willingness of classes to pay for test attributes
| Attribute | Levels | Class 1: mWTP in € (95% CI) | Class 2: mWTP in € (95% CI) |
|---|---|---|---|
| Intercept | 786.3 (308.5; 1,233.9) | −1,931.3 (−3,935.2; −905.2) | |
| Test accuracy | 90%–99% | −127.6 (−258.7; −17.9) | 737.8 (489.5; 1,218.2) |
| Identified diseases | All, treatable, hereditary | −164.6 (−289.7; −45.1) | −303.7 (−560.2; −127.1) |
| Probability of occurrence | 10%–70% | −502.3 (−707.4; −356.8) | 1,514.5 (1,071.5; 2,435.5) |
| Access to data | Insurer, researcher and insurer, researcher, no one else | 722.9 (561.2; 967.9) | −383.8 (−645.3; −228.7) |
Note: Class 1: higher proportion of men; Class 2: higher proportion of women.
Abbreviations: CI, confidence interval; mWTP, marginal willingness to pay.
GLMM fixed-effects results for participation in genetic testing
| Variables | Levels | Coefficient | SE | |
|---|---|---|---|---|
| Test costs | €1,500 | −0.261 | 0.100 | 0.009 |
| €1,000 | −0.237 | 0.090 | 0.009 | |
| €500 (ref) | −0.024 | |||
| Probability of occurrence | 10% | −0.089 | 0.101 | 0.375 |
| 40% | −0.012 | 0.094 | 0.897 | |
| 70% (ref) | −0.077 | |||
| Access to data | Insurer and researcher | −0.275 | 0.118 | 0.019 |
| Researcher | 0.097 | 0.106 | 0.358 | |
| Insurer | −0.349 | 0.134 | 0.009 | |
| No one else (ref) | −0.024 | |||
| Educational level | −0.693 | 0.263 | 0.008 | |
| Employment status | −0.858 | 0.541 | 0.113 | |
| Income | 0.338 | 0.226 | 0.134 | |
| Screening utilization: subsidy by SHI | 1.857 | 0.465 | 0.000 | |
| Afraid of genetic diseases | 0.975 | 0.564 | 0.084 | |
Notes: Intercept coefficient 1.409; SE 1.231; P 0.252 and random intercept PersonID variance 9.765; standard deviation 3.125.
Abbreviations: GLMM, generalized linear mixed-effects model; SE, standard error; SHI, social or private health insurance.
Overview of used variables
| Topics | Variable | Meaning | Explanation | Characteristics | Type |
|---|---|---|---|---|---|
| DCE-specific variables | Questionnaire | ||||
| Set | |||||
| Seti | Questionnaire combined with set | ||||
| Alternative | 1 | ||||
| Choice | 0: no | ||||
| Realn | Real decision (numeric) | Would you also choose the chosen alternative in reality? | 0: no | Numeric | |
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| Attributes | Att_TA | Test accuracy | Test accuracy | 1: 90% | |
| Att_DIS | Identified diseases | Test results | 3: all | ||
| Att_TC | Test costs | Test costs | 3: €1,500 | ||
| Att_PROB | Probability of occurrence | Probability of occurrence of disease | 1: 10% | ||
| Att_ACC | 3: researcher | ||||
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| Sociodemographic aspects | PersonID | Person identifier | |||
| Sex | Sex | 1: male | Binary | ||
| Age | Age | Numeric | |||
| EDL | EDL | Highest level of education | 0: no graduation | Numeric | |
| ES | ES | 0: nonemployed | Numeric | ||
| INCn | INCn | 0: no own income | Numeric | ||
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| Health insurance and utilization of screening | SHI | Insurance | 1: statutory | Binary | |
| PSC | PSC program | 1: 1–2 times the year | Numeric | ||
| PSChin | PSC program at full-cost coverage by health insurance | 0: no | Numeric | ||
| PSCshare_r | PSC if health insurance pays a share | Recoded variable if Kostzu =1 or Kostal =1 then Kostzu_r =1 | 0: no | Binary | |
| PSCsharen | PSC if health insurance pays a share (numeric) | 0: no | Numeric | ||
| PSCpocketn | PSC on own payment (numeric) | 0: no | Numeric | ||
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| Health status and diseases | HSn | Subjective HSn | 1: very bad | Numeric | |
| FHD | Known FHD | 0: no | Binary | ||
| FHDfree | Open questions to hereditary diseases in the family | Free text | Free text | ||
| CHIn | CHIn | 0: no | Binary | ||
| DCHIn | DCHIn | 0: no | Numeric | ||
| AFHD | AFHD | 0: no | Numeric | ||
| AFHDfree | Fear of which hereditary disease | Free text | Free text | ||
Abbreviations: AFHD, afraid of hereditary disease; CHIn, children (numeric); DCHIn, desire to have children (numeric); FHD, family hereditary disease; EDL, educational level; ES, employment status; HSn, health status (numeric); INCn, income (numeric); PSC, participation in screening; SHI, social or private health insurance.
Overview of included independent variables used in GLMM and LCMLM
| Model | Dependent variable | Independent variables tested | Mixed effects | Lean model |
|---|---|---|---|---|
| GLMM (for both participants and full-sample) | Choice | Att_TA + Att_DIS + Att_TC + Att_PROB + Att_ACC, ES × EDL, KF, AFHD, CHI, DCHI, SE, HSn, PSC | PersonID, serial, Set, Seti, age, sex, EDL, ES | Wahl ~ Att_TA + Att_DIS + Att_TC + Att_PROB + Att_ACC + ES × EDL + (1|Seti) |
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| LCMLM | Choice | Att_TA + Att_DIS + Att_TC + Att_PROB + Att_ACC | PersonID, Att_TA + Att_DIS + Att_TC + Att_PROB + Att_ACC, classmb: age, sex, SHI, ES, EDL, INCn, HSn, PSC, KF, AFHD, CHI, DCHI, Kostzu_r, EDL × HSn | Wahl ~ Att_TA + Att_DIS + Att_TC + Att_PROB + Att_ACC, random = ~ Seti, subject = “PersonID”, mixture = ~ Att_TA + Att_DIS + Att_TC + Att_PROB + Att_ACC, classmb = ~ sex + EDL + INCn + HSn, ng =2, data = Daten, link = “linear” |
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| GLMM real | Real | Datentn$Att_TA + Datentn$Att_DIS + Datentn$Att_TC + Datentn$Att_PROB + Datentn$Att_ACC | PersonID Datentn$sex + Datentn$age, +PSCpocketn + SHI, EDL+ES + INCn + PSC + Kostzu_r + Khf + CHIn + HSn + DCHIn + PSC, AFHD | Real ~ Att_TC + Att_PROB + Att_ACC + EDL + ES + INCn + Kostzu_r + AFHD (1|PersonID) |
Abbreviations: AFHD, afraid of hereditary disease; CHI, children; CHIn, CHI (numeric); DCHIn, desire to have children; DCHIn, DCHI (numeric); EDL, educational level; ES, employment status; GLMM, generalized linear mixed-effects model; HSn, health status (numeric); INCn, income (numeric); KL, known familar hereditary diseases; LCMLM, latent class mixed logit model; PSC, participation in screening; SHI, social or private health insurance.
Latent class mixed logit model results – attribute effects
| Attributes and levels | Class 1 (higher proportion of men)
| Class 2 (higher proportion of woman)
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|---|---|---|---|---|---|---|
| SE | SE | |||||
| Test accuracy | ||||||
| 90% | −0.002 | 0.04244 | 0.962 | −0.234 | 0.03229 | 0.000 |
| 95% | 0.079 | 0.03596 | 0.027 | 0.015 | 0.03102 | 0.634 |
| 99% (ref) | −0.081 | −0.248 | ||||
| Identified diseases | ||||||
| All diseases | 0.082 | 0.0405 | 0.043 | 0.137 | 0.03581 | 0.000 |
| Treatable diseases | −0.078 | 0.03621 | 0.030 | −0.088 | 0.03373 | 0.009 |
| Serious hereditary disease (ref) | 0.160 | 0.225 | ||||
| Test costs | ||||||
| €1,500 | −0.216 | 0.03467 | 0.000 | −0.151 | 0.03073 | 0.000 |
| €1,000 | −0.016 | 0.03283 | 0.620 | 0.108 | 0.03043 | 0.000 |
| €500 (ref) | −0.200 | −0.259 | ||||
| Probability of occurrence | ||||||
| 10% | 0.158 | 0.03623 | 0.000 | −0.398 | 0.0341 | 0.000 |
| 40% | 0.075 | 0.03431 | 0.029 | 0.007 | 0.03158 | 0.834 |
| 70% (ref) | 0.083 | −0.404 | ||||
| Access to data | ||||||
| Insurer and researcher | −0.200 | 0.04125 | 0.000 | 0.142 | 0.03933 | 0.000 |
| Researcher | 0.282 | 0.03912 | 0.000 | 0.314 | 0.03644 | 0.000 |
| Insurer | −0.478 | 0.04563 | 0.000 | −0.043 | 0.03765 | 0.258 |
| No one else (ref) | 0.760 | 0.357 | ||||
| Intercept | ||||||
| 0 | NA | NA | −0.01679 | 0.0276 | 0.54311 | |
Notes: Adjusted for class-membership effects, sex, educational level, and income; subject, “PersonID”.
Abbreviations: SE, standard error; NA, not applicable.
Results from the generalized linear mixed-effects model
| Topics | Variables | Levels | Full sample
| Potential users
| ||||
|---|---|---|---|---|---|---|---|---|
| SE | SE | |||||||
| Attributes | Test accuracy | 90% | −0.330 | 0.050 | 0.000 | −0.251 | 0.072 | 0.000 |
| 95% | 0.120 | 0.051 | 0.020 | 0.028 | 0.075 | 0.709 | ||
| 99% (ref) | −0.450 | −0.279 | ||||||
| Identified diseases | All diseases | 0.228 | 0.049 | 0.000 | 0.496 | 0.071 | 0.000 | |
| Treatable diseases | −0.259 | 0.050 | 0.000 | −0.386 | 0.073 | 0.000 | ||
| Serious hereditary disease (ref) | 0.487 | 0.882 | ||||||
| Test costs | €1,500 | −0.515 | 0.051 | 0.000 | −0.497 | 0.073 | 0.000 | |
| €1,000 | 0.067 | 0.046 | 0.148 | −0.013 | 0.067 | 0.842 | ||
| −0.582 | −0.483 | |||||||
| €500 (ref) | ||||||||
| Probability of occurrence | 10% | −0.411 | 0.051 | 0.000 | −0.373 | 0.073 | 0.000 | |
| 40% | 0.100 | 0.050 | 0.043 | 0.092 | 0.072 | 0.199 | ||
| 70% (ref) | −0.511 | −0.466 | ||||||
| Access to data | Insurer and researcher | −0.011 | 0.062 | 0.860 | −0.033 | 0.089 | 0.709 | |
| Researcher | 0.755 | 0.065 | 0.000 | 0.554 | 0.092 | 0.000 | ||
| Insurer | −0.812 | 0.067 | 0.000 | −0.636 | 0.102 | 0.000 | ||
| No one else (ref) | 0.046 | 0.049 | ||||||
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| Person-specific data | Employment | 0.000 | 0.131 | 1.000 | −0.007 | 0.342 | 0.983 | |
| Educational level | 0.000 | 0.076 | 1.000 | −0.006 | 0.194 | 0.975 | ||
| Employment × educational level | 0.000 | 0.045 | 1.000 | 0.106 | 0.981 | |||
| Intercept | 0.007 | 0.258 | 0.978 | 0.020 | 0.654 | 0.975 | ||