Literature DB >> 29494910

Identification of circular RNAs and their alterations involved in developing male Xenopus laevis chronically exposed to atrazine.

Linlin Sai1, Ling Li2, Chenyang Hu2, Binpeng Qu3, Qiming Guo2, Qiang Jia2, Yu Zhang2, Cunxiang Bo2, Xiangxin Li4, Hua Shao5, Jack C Ng6, Cheng Peng7.   

Abstract

Atrazine (AZ) is an environmental endocrine disrupting chemical which can affect the development of amphibians. In our past studies, we demonstrated that chronical exposure to 100 μg/L AZ can cause abnormalities in development and related genes expression of gonads in developing male Xenopus laevis (X. laevis) tadpoles. Recent studies by others have demonstrated that circular RNAs (circRNAs) are implicated in multiple developmental anomalies. However, whether circRNAs involve in the effects in AZ-exposed X. laevis remains unknown. In this study, over 68575 circRNAs were detected by circRNA sequencing of testis tissues from control groups (n = 3) and AZ-treated X. laevis (n = 3). Treatment of AZ led to 405 circRNAs differentially expressed including 44 upregulated and 361 downregulated compared with froglets in the control groups. Two upregulated and 6 downregulated circRNAs were further validated by real-time PCR assay which displayed consistent regulation patterns as shown by the transcriptome sequencing results. Two hundreds and eighty two differentially expressed circRNAs played miRNA sponges roles. Kyoto Encyclopedia of Genes and Genomes pathway analysis of miRNA targets showed that AZ-affected circRNAs are mainly involved in 19 pathways. The Wnt signaling pathway and progesterone-mediated oocyte maturation pathway may be two involved signal pathways. This study for the first time provides evidence that AZ can alter circRNAs which play a role in AZ-induced testicular degeneration of developing male X. laevis through regulation of expressions of functional genes in the testes of X. laevis.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  CircRNA; CircRNA-miRNA; Circular-seq; Frog; Herbicide; Reproductive toxicology

Mesh:

Substances:

Year:  2018        PMID: 29494910     DOI: 10.1016/j.chemosphere.2018.02.140

Source DB:  PubMed          Journal:  Chemosphere        ISSN: 0045-6535            Impact factor:   7.086


  5 in total

1.  Genomic Tools for Environmental Epigenetics and Implications for Public Health.

Authors:  Bambarendage P U Perera; Laurie Svoboda; Dana C Dolinoy
Journal:  Curr Opin Toxicol       Date:  2019-03-08

Review 2.  The role of environmental exposures and the epigenome in health and disease.

Authors:  Bambarendage P U Perera; Christopher Faulk; Laurie K Svoboda; Jaclyn M Goodrich; Dana C Dolinoy
Journal:  Environ Mol Mutagen       Date:  2019-06-20       Impact factor: 3.216

Review 3.  CircNCX1: the "Lord of the Ring" in the Heart - Insight into Its Sequence Characteristic, Expression, Molecular Mechanisms, and Clinical Application.

Authors:  Lin Ding; Mengyang Li; Fuqing Yang; Jianxun Wang
Journal:  J Cardiovasc Transl Res       Date:  2021-10-12       Impact factor: 3.216

4.  Validation and bioinformatics analysis of differentially expressed circRNAs involved in developing male Xenopus laevis chronically exposed to atrazine.

Authors:  Linlin Sai; Ling Li; Chenyang Hu; Binpeng Qu; Qiming Guo; Qiang Jia; Yu Zhang; Cunxiang Bo; Xiangxin Li; Hua Shao; Jack C Ng; Cheng Peng
Journal:  Data Brief       Date:  2018-04-10

5.  The Xenopus animal cap transcriptome: building a mucociliary epithelium.

Authors:  Alessandro Angerilli; Pawel Smialowski; Ralph Aw Rupp
Journal:  Nucleic Acids Res       Date:  2018-09-28       Impact factor: 16.971

  5 in total

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