Literature DB >> 29494618

Recombination and peak jumping.

Kristina Crona1.   

Abstract

We show that genetic recombination can be a powerful mechanism for escaping suboptimal peaks. Recent studies of empirical fitness landscapes reveal complex gene interactions and multiple peaks. However, classical work on recombination largely ignores the effect of complex gene interactions. Briefly, we restrict to fitness landscapes where the global peak is difficult to access. If the optimal genotype can be generated by shuffling genes present in the population, then recombination will produce the genotype. If, in addition, recombination is sufficiently rare, then the proportion of the genotype is expected to increase. Specifically, we consider landscapes where shuffling of suboptimal peak genotypes can produce the global peak genotype. The advantage of recombination we identify has no correspondence for 2-locus systems or for smooth landscapes. The effect of recombination indicated is sometimes extreme, also for rare recombination, in the sense that shutting off recombination could result in the organism failing to adapt. A standard question about recombination is whether the mechanism tends to accelerate or decelerate adaptation. However, we argue that extreme effects may be more important than how the majority falls. In a limited sense, our result can be considered a support for Sewall Wright's view that adaptation sometimes works better in subdivided populations.

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Year:  2018        PMID: 29494618      PMCID: PMC5832230          DOI: 10.1371/journal.pone.0193123

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


  21 in total

Review 1.  Resolving the paradox of sex and recombination.

Authors:  Sarah P Otto; Thomas Lenormand
Journal:  Nat Rev Genet       Date:  2002-04       Impact factor: 53.242

2.  Adaptation in sexuals vs. asexuals: clonal interference and the Fisher-Muller model.

Authors:  Yuseob Kim; H Allen Orr
Journal:  Genetics       Date:  2005-07-14       Impact factor: 4.562

3.  Evolution in Mendelian Populations.

Authors:  S Wright
Journal:  Genetics       Date:  1931-03       Impact factor: 4.562

Review 4.  Empirical fitness landscapes and the predictability of evolution.

Authors:  J Arjan G M de Visser; Joachim Krug
Journal:  Nat Rev Genet       Date:  2014-06-10       Impact factor: 53.242

5.  The rate of fitness-valley crossing in sexual populations.

Authors:  Daniel B Weissman; Marcus W Feldman; Daniel S Fisher
Journal:  Genetics       Date:  2010-10-05       Impact factor: 4.562

Review 6.  Recombination in HIV: an important viral evolutionary strategy.

Authors:  D S Burke
Journal:  Emerg Infect Dis       Date:  1997 Jul-Sep       Impact factor: 6.883

7.  Multidimensional epistasis and the transitory advantage of sex.

Authors:  Stefan Nowak; Johannes Neidhart; Ivan G Szendro; Joachim Krug
Journal:  PLoS Comput Biol       Date:  2014-09-18       Impact factor: 4.475

8.  Detecting High-Order Epistasis in Nonlinear Genotype-Phenotype Maps.

Authors:  Zachary R Sailer; Michael J Harms
Journal:  Genetics       Date:  2017-01-18       Impact factor: 4.562

9.  The effect of bacterial recombination on adaptation on fitness landscapes with limited peak accessibility.

Authors:  Danesh Moradigaravand; Jan Engelstädter
Journal:  PLoS Comput Biol       Date:  2012-10-25       Impact factor: 4.475

10.  Recombination accelerates adaptation on a large-scale empirical fitness landscape in HIV-1.

Authors:  Danesh Moradigaravand; Roger Kouyos; Trevor Hinkley; Mojgan Haddad; Christos J Petropoulos; Jan Engelstädter; Sebastian Bonhoeffer
Journal:  PLoS Genet       Date:  2014-06-26       Impact factor: 5.917

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