Literature DB >> 29492730

Stable isotope labeling approaches for NMR characterization of glycoproteins using eukaryotic expression systems.

Saeko Yanaka1,2, Hirokazu Yagi2, Rina Yogo1,2, Maho Yagi-Utsumi1,2, Koichi Kato3,4.   

Abstract

Glycoproteins are characterized by the heterogeneous and dynamic nature of their glycan moieties, which hamper crystallographic analysis. NMR spectroscopy provides potential advantages in dealing with such complicated systems, given that the target molecules can be isotopically labeled. Methods of metabolic isotope labeling in recombinant glycoproteins have been developed recently using a variety of eukaryotic production vehicles, including mammalian, yeast, insect, and plant cells, each of which has a distinct N-glycan diversification pathway. Yeast genetic engineering has enabled the overexpression of homogeneous high-mannose-type oligosaccharides with 13C labeling for NMR characterization of their conformational dynamics. The utility of stable isotope-assisted NMR spectroscopy has also been demonstrated using the Fc fragment of immunoglobulin G (IgG) as a model glycoprotein, providing useful information regarding intramolecular carbohydrate-protein interactions. Transverse relaxation optimization of intact IgG with a molecular mass of 150 kDa has been achieved by tailored deuteration of selected amino acid residues using a mammalian expression system. This offers a useful probe for the characterization of molecular interaction networks in multimolecular crowded systems typified by serum. Perspectives regarding the development of techniques for tailoring glycoform designs and isotope labeling of recombinant glycoproteins are also discussed.

Entities:  

Keywords:  Antibody; Eukaryotic expression system; Glycoprotein; Oligosaccharide; Serum; Stable isotope labeling

Mesh:

Substances:

Year:  2018        PMID: 29492730     DOI: 10.1007/s10858-018-0169-2

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  64 in total

Review 1.  Emerging technologies for making glycan-defined glycoproteins.

Authors:  Lai-Xi Wang; Joseph V Lomino
Journal:  ACS Chem Biol       Date:  2011-12-14       Impact factor: 5.100

2.  Remarkable transglycosylation activity of glycosynthase mutants of endo-D, an endo-β-N-acetylglucosaminidase from Streptococcus pneumoniae.

Authors:  Shu-Quan Fan; Wei Huang; Lai-Xi Wang
Journal:  J Biol Chem       Date:  2012-02-08       Impact factor: 5.157

3.  Biopharmaceutical benchmarks 2014.

Authors:  Gary Walsh
Journal:  Nat Biotechnol       Date:  2014-10       Impact factor: 54.908

Review 4.  Live cell NMR.

Authors:  Darón I Freedberg; Philipp Selenko
Journal:  Annu Rev Biophys       Date:  2014       Impact factor: 12.981

5.  Expression of full-length immunoglobulins in Escherichia coli: rapid and efficient production of aglycosylated antibodies.

Authors:  Laura C Simmons; Dorothea Reilly; Laura Klimowski; T Shantha Raju; Gloria Meng; Paul Sims; Kyu Hong; Robert L Shields; Lisa A Damico; Patricia Rancatore; Daniel G Yansura
Journal:  J Immunol Methods       Date:  2002-05-01       Impact factor: 2.303

6.  Towards a network theory of the immune system.

Authors:  N K Jerne
Journal:  Ann Immunol (Paris)       Date:  1974-01

Review 7.  Chemical approaches toward understanding glycan-mediated protein quality control.

Authors:  Yoichi Takeda; Kiichiro Totani; Ichiro Matsuo; Yukishige Ito
Journal:  Curr Opin Chem Biol       Date:  2009-10-12       Impact factor: 8.822

8.  Structural comparison of fucosylated and nonfucosylated Fc fragments of human immunoglobulin G1.

Authors:  Shigeki Matsumiya; Yoshiki Yamaguchi; Jun-ichi Saito; Mayumi Nagano; Hiroaki Sasakawa; Shizuo Otaki; Mitsuo Satoh; Kenya Shitara; Koichi Kato
Journal:  J Mol Biol       Date:  2007-02-22       Impact factor: 5.469

9.  Defucosylated chimeric anti-CC chemokine receptor 4 IgG1 with enhanced antibody-dependent cellular cytotoxicity shows potent therapeutic activity to T-cell leukemia and lymphoma.

Authors:  Rinpei Niwa; Emi Shoji-Hosaka; Mikiko Sakurada; Toyohide Shinkawa; Kazuhisa Uchida; Kazuyasu Nakamura; Kouji Matsushima; Ryuzo Ueda; Nobuo Hanai; Kenya Shitara
Journal:  Cancer Res       Date:  2004-03-15       Impact factor: 12.701

Review 10.  Advances in recombinant antibody manufacturing.

Authors:  Renate Kunert; David Reinhart
Journal:  Appl Microbiol Biotechnol       Date:  2016-03-03       Impact factor: 4.813

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  14 in total

1.  Advanced isotopic labeling for the NMR investigation of challenging proteins and nucleic acids.

Authors:  Jerome Boisbouvier; Lewis E Kay
Journal:  J Biomol NMR       Date:  2018-07       Impact factor: 2.835

Review 2.  Biophysical characterization of dynamic structures of immunoglobulin G.

Authors:  Saeko Yanaka; Rina Yogo; Koichi Kato
Journal:  Biophys Rev       Date:  2020-05-15

Review 3.  Characterizing Post-Translational Modifications and Their Effects on Protein Conformation Using NMR Spectroscopy.

Authors:  Ajith Kumar; Vaishali Narayanan; Ashok Sekhar
Journal:  Biochemistry       Date:  2019-11-04       Impact factor: 3.162

4.  Sparse isotope labeling for nuclear magnetic resonance (NMR) of glycoproteins using 13C-glucose.

Authors:  Monique J Rogals; Jeong-Yeh Yang; Robert V Williams; Kelley W Moremen; I Jonathan Amster; James H Prestegard
Journal:  Glycobiology       Date:  2021-05-03       Impact factor: 4.313

5.  Expression and Purification of an Intrinsically Disordered Protein.

Authors:  Karamjeet K Singh; Steffen P Graether
Journal:  Methods Mol Biol       Date:  2020

Review 6.  Troubleshooting Guide to Expressing Intrinsically Disordered Proteins for Use in NMR Experiments.

Authors:  Steffen P Graether
Journal:  Front Mol Biosci       Date:  2019-01-18

7.  Glycoprofile Analysis of an Intact Glycoprotein As Inferred by NMR Spectroscopy.

Authors:  Luca Unione; Maria Pia Lenza; Ana Ardá; Pedro Urquiza; Ana Laín; Juan Manuel Falcón-Pérez; Jesús Jiménez-Barbero; Oscar Millet
Journal:  ACS Cent Sci       Date:  2019-07-24       Impact factor: 14.553

8.  Local Deuteration Enables NMR Observation of Methyl Groups in Proteins from Eukaryotic and Cell-Free Expression Systems.

Authors:  Abhinav Dubey; Nikolay Stoyanov; Thibault Viennet; Sandeep Chhabra; Shantha Elter; Jan Borggräfe; Aldino Viegas; Radosław P Nowak; Nikola Burdzhiev; Ognyan Petrov; Eric S Fischer; Manuel Etzkorn; Vladimir Gelev; Haribabu Arthanari
Journal:  Angew Chem Int Ed Engl       Date:  2021-05-06       Impact factor: 15.336

Review 9.  Glycan structures and their interactions with proteins. A NMR view.

Authors:  Ana Gimeno; Pablo Valverde; Ana Ardá; Jesús Jiménez-Barbero
Journal:  Curr Opin Struct Biol       Date:  2019-12-10       Impact factor: 6.809

Review 10.  Novel NMR Avenues to Explore the Conformation and Interactions of Glycans.

Authors:  Pablo Valverde; Jon I Quintana; Jose I Santos; Ana Ardá; Jesús Jiménez-Barbero
Journal:  ACS Omega       Date:  2019-08-19
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