Literature DB >> 29487065

No way out: when RNA elements promote nuclear retention.

Federico Agostini1, Jernej Ule1,2, Julian A Zagalak1,2.   

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Year:  2018        PMID： 29487065      PMCID： PMC5852650          DOI： 10.15252/embj.201899123

Source DB:  PubMed          Journal:  EMBO J        ISSN： 0261-4189            Impact factor:   11.598


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  13 in total

1.  ExportAid: database of RNA elements regulating nuclear RNA export in mammals.

Authors:  Matteo Giulietti; Sara Armida Milantoni; Tatiana Armeni; Giovanni Principato; Francesco Piva
Journal:  Bioinformatics       Date:  2014-09-30       Impact factor: 6.937

Review 2.  mRNA localization: gene expression in the spatial dimension.

Authors:  Kelsey C Martin; Anne Ephrussi
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

3.  Cellular RNA binding proteins NS1-BP and hnRNP K regulate influenza A virus RNA splicing.

Authors:  Pei-Ling Tsai; Ni-Ting Chiou; Sharon Kuss; Adolfo García-Sastre; Kristen W Lynch; Beatriz M A Fontoura
Journal:  PLoS Pathog       Date:  2013-06-27       Impact factor: 6.823

4.  The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.

Authors:  Thomas Derrien; Rory Johnson; Giovanni Bussotti; Andrea Tanzer; Sarah Djebali; Hagen Tilgner; Gregory Guernec; David Martin; Angelika Merkel; David G Knowles; Julien Lagarde; Lavanya Veeravalli; Xiaoan Ruan; Yijun Ruan; Timo Lassmann; Piero Carninci; James B Brown; Leonard Lipovich; Jose M Gonzalez; Mark Thomas; Carrie A Davis; Ramin Shiekhattar; Thomas R Gingeras; Tim J Hubbard; Cedric Notredame; Jennifer Harrow; Roderic Guigó
Journal:  Genome Res       Date:  2012-09       Impact factor: 9.043

5.  Massively parallel functional annotation of 3' untranslated regions.

Authors:  Wenxue Zhao; Joshua L Pollack; Denitza P Blagev; Noah Zaitlen; Michael T McManus; David J Erle
Journal:  Nat Biotechnol       Date:  2014-03-16       Impact factor: 54.908

6.  RNAmotifs: prediction of multivalent RNA motifs that control alternative splicing.

Authors:  Matteo Cereda; Uberto Pozzoli; Gregor Rot; Peter Juvan; Anthony Schweitzer; Tyson Clark; Jernej Ule
Journal:  Genome Biol       Date:  2014-01-31       Impact factor: 13.583

7.  Splicing repression allows the gradual emergence of new Alu-exons in primate evolution.

Authors:  Jan Attig; Igor Ruiz de Los Mozos; Nejc Haberman; Zhen Wang; Warren Emmett; Kathi Zarnack; Julian König; Jernej Ule
Journal:  Elife       Date:  2016-11-18       Impact factor: 8.140

8.  In situ functional dissection of RNA cis-regulatory elements by multiplex CRISPR-Cas9 genome engineering.

Authors:  Qianxin Wu; Quentin R V Ferry; Toni A Baeumler; Yale S Michaels; Dimitrios M Vitsios; Omer Habib; Roland Arnold; Xiaowei Jiang; Stefano Maio; Bruno R Steinkraus; Marta Tapia; Paolo Piazza; Ni Xu; Georg A Holländer; Thomas A Milne; Jin-Soo Kim; Anton J Enright; Andrew R Bassett; Tudor A Fulga
Journal:  Nat Commun       Date:  2017-12-13       Impact factor: 14.919

9.  Direct competition between hnRNP C and U2AF65 protects the transcriptome from the exonization of Alu elements.

Authors:  Kathi Zarnack; Julian König; Mojca Tajnik; Iñigo Martincorena; Sebastian Eustermann; Isabelle Stévant; Alejandro Reyes; Simon Anders; Nicholas M Luscombe; Jernej Ule
Journal:  Cell       Date:  2013-01-31       Impact factor: 41.582

10.  CRISPR-Cas9-mediated functional dissection of 3'-UTRs.

Authors:  Wenxue Zhao; David Siegel; Anne Biton; Olivier Le Tonqueze; Noah Zaitlen; Nadav Ahituv; David J Erle
Journal:  Nucleic Acids Res       Date:  2017-10-13       Impact factor: 16.971
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