| Literature DB >> 29478083 |
Magnus Bordewich1, Katharina T Huber2, Vincent Moulton2, Charles Semple3.
Abstract
Phylogenetic networks are a type of leaf-labelled, acyclic, directed graph used by biologists to represent the evolutionary history of species whose past includes reticulation events. A phylogenetic network is tree-child if each non-leaf vertex is the parent of a tree vertex or a leaf. Up to a certain equivalence, it has been recently shown that, under two different types of weightings, edge-weighted tree-child networks are determined by their collection of distances between each pair of taxa. However, the size of these collections can be exponential in the size of the taxa set. In this paper, we show that, if we have no "shortcuts", that is, the networks are normal, the same results are obtained with only a quadratic number of inter-taxa distances by using the shortest distance between each pair of taxa. The proofs are constructive and give cubic-time algorithms in the size of the taxa sets for building such weighted networks.Entities:
Keywords: Distance matrix; Normal network; Tree–child network
Mesh:
Year: 2018 PMID: 29478083 DOI: 10.1007/s00285-018-1218-x
Source DB: PubMed Journal: J Math Biol ISSN: 0303-6812 Impact factor: 2.259