Literature DB >> 26666756

Determining phylogenetic networks from inter-taxa distances.

Magnus Bordewich1, Charles Semple2.   

Abstract

We consider the problem of determining the topological structure of a phylogenetic network given only information about the path-length distances between taxa. In particular, one of the main results of the paper shows that binary tree-child networks are essentially determined by such information.

Entities:  

Keywords:  Distance methods; Phylogenetic network; Temporal network; Tree-child network

Mesh：

Year:  2015        PMID： 26666756     DOI： 10.1007/s00285-015-0950-8

Source DB:  PubMed          Journal:  J Math Biol        ISSN： 0303-6812            Impact factor:   2.259


  10 in total

1.  Theoretical foundation of the balanced minimum evolution method of phylogenetic inference and its relationship to weighted least-squares tree fitting.

Authors:  Richard Desper; Olivier Gascuel
Journal:  Mol Biol Evol       Date:  2003-12-23       Impact factor: 16.240

2.  Reconstruction of certain phylogenetic networks from their tree-average distances.

Authors:  Stephen J Willson
Journal:  Bull Math Biol       Date:  2013-07-18       Impact factor: 1.758

3.  Comparison of tree-child phylogenetic networks.

Authors:  Gabriel Cardona; Francesc Rosselló; Gabriel Valiente
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2009 Oct-Dec       Impact factor: 3.710

4.  A practical algorithm for reconstructing level-1 phylogenetic networks.

Authors:  Katharina T Huber; Leo van Iersel; Steven Kelk; Radosław Suchecki
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2011 May-Jun       Impact factor: 3.710

5.  BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data.

Authors:  O Gascuel
Journal:  Mol Biol Evol       Date:  1997-07       Impact factor: 16.240

6.  Amalgamating source trees with different taxonomic levels.

Authors:  Vincent Berry; Olaf R P Bininda-Emonds; Charles Semple
Journal:  Syst Biol       Date:  2012-11-23       Impact factor: 15.683

7.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

Review 8.  Construction of phylogenetic trees.

Authors:  W M Fitch; E Margoliash
Journal:  Science       Date:  1967-01-20       Impact factor: 47.728

9.  Theoretical foundation of the minimum-evolution method of phylogenetic inference.

Authors:  A Rzhetsky; M Nei
Journal:  Mol Biol Evol       Date:  1993-09       Impact factor: 16.240

10.  Tree-average distances on certain phylogenetic networks have their weights uniquely determined.

Authors:  Stephen J Willson
Journal:  Algorithms Mol Biol       Date:  2012-05-15       Impact factor: 1.405
  10 in total
  2 in total

1.  Recovering normal networks from shortest inter-taxa distance information.

Authors:  Magnus Bordewich; Katharina T Huber; Vincent Moulton; Charles Semple
Journal:  J Math Biol       Date:  2018-02-24       Impact factor: 2.259

2.  Combinatorial characterization of a certain class of words and a conjectured connection with general subclasses of phylogenetic tree-child networks.

Authors:  Miquel Pons; Josep Batle
Journal:  Sci Rep       Date:  2021-11-08       Impact factor: 4.379
  2 in total

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